Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2366g00022 ATGAATTGTTTCTCTCTTCTTTTCCGAAAAAGGAGGGCTTCCTCAGCCACACAATCAACTGAAGTTGATATAGATATTTCAAACATTCAGAATGTCAATCTTTACACTTACAAGGAATTGCGAATTGCCACCCAAGGTTTCAGCCTAGCAAACAAGATAGGGGAGGGAGGTTTTGGATCAGTTTATAAGGGAAAGTTGAGAAATGGTACTCTGGCTGCTATAAAGGTTTTGTCAGCTGAATCAAGACAAGGTGTCCAGGAGTTCTTAACAGAAATCAAGGTGATCTCTAGTATAGAGCATGAGAATTTAGTTGAGTTGTATGGATGCTGTGTGGAAGGAAACCACAGGATTTTGGTGTATAGCTATCTTGAGAATAACAGCCTAGCACAAACACTTCTTGGTGGAAGCCATAGTAGCATCCAATTCAATTGGCATGTACGGAGGAACATTTGCATTGGTGTTGCCCGGGGCCTTGCATTCCTTCATGATGAAGTTCGGCCACATATTATTCATAGAGATATTAAGGCAAGCAATATATTACTTGACAAAGGCCTCCAGCCCAAAATTTCAGATTTTGGCCTTGCAAGGCTTATAGCACCAGATCAGACCCATATTAGTACACTTGTTGCTGGTACATACGGCTATCTGGCACCTGAATTTGCAATACGAAATCAAGTTACAAGAAGAGCAGATGTATATAGTTTTGGAGTTCTGCTACTAGAAATTGTTAGTGGGAGATGTAACACAAACAGACATTTACCTGCGGAAGAACGGTATCTACATACAAGGGCGTGGAATTTGTATGAGAGGGGAGAGCTGGAGAGTTTGGTGGATGTCATGTTGGATGGAGACTTCAACGTTGAGGAGGCGATAAGGTTTTGTAAGATTGGTCTTCTTTGCATTCAGAATTCTCTTCAGCTCAGACCTTCTATGTCTACTGTGCTTAAAATGCTAATAGGCGAAACAGAAGTGAATGAGGAAAAGATTACAAAACCTGGCTTATTTGAATTTCTGGAAGCCAAAGACCAAGGGAAACAGAAAGACATTGCTGAAGTGGAGAAAACATTTCTTTTGGCTGGTAAAGGGAAGCATGATGATTCATCTTCATCAGGAACCATGAGTTCTTTTGCCACCATGACCTTCACTTCAATTTATGACCGGAGCAATTAA 1170 0.4085 MNCFSLLFRKRRASSATQSTEVDIDISNIQNVNLYTYKELRIATQGFSLANKIGEGGFGSVYKGKLRNGTLAAIKVLSAESRQGVQEFLTEIKVISSIEHENLVELYGCCVEGNHRILVYSYLENNSLAQTLLGGSHSSIQFNWHVRRNICIGVARGLAFLHDEVRPHIIHRDIKASNILLDKGLQPKISDFGLARLIAPDQTHISTLVAGTYGYLAPEFAIRNQVTRRADVYSFGVLLLEIVSGRCNTNRHLPAEERYLHTRAWNLYERGELESLVDVMLDGDFNVEEAIRFCKIGLLCIQNSLQLRPSMSTVLKMLIGETEVNEEKITKPGLFEFLEAKDQGKQKDIAEVEKTFLLAGKGKHDDSSSSGTMSSFATMTFTSIYDRSN 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2366g00022 389 FunFam cold-responsive protein kinase 1 17 122 - -
Gabi2366g00022 389 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Gabi2366g00022 389 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 330 - -
Gabi2366g00022 389 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2366g00022 389 Gene3D Transferase(Phosphotransferase) domain 1 123 332 - -
Gabi2366g00022 389 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 347 - -
Gabi2366g00022 389 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
Gabi2366g00022 389 SUPERFAMILY Protein kinase-like (PK-like) 24 318 IPR011009 -
Gabi2366g00022 389 CDD STKc_IRAK 53 318 - -
Gabi2366g00022 389 Pfam Protein kinase domain 49 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2366g00022 389 ProSiteProfiles Protein kinase domain profile. 47 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2366g00022 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2366g00022 Gabi-Chr2366 313409 318023 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2366g00022 6 333 Receptor kinase-like Gene Family AT1G56120 52.134 2.99e-107 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi2366g00022 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2366g00022 - - gmx:100801735 579.711