Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2366g00019 ATGTCAAGCAGCAAAGAAATAGAGGATTTATGTTATGATAACTTTGAAGGATCTAATGAAGAAAGACAGATTTTTACAGAGGTCTTTTCTGGTAATGACATTTTTCAGTGTAGTCAGAGGTGTCTTGTTTCTGGAGTTATCAATTTTGAACATGAATCCACTAAGAACACATTTAAATCATTCTGCTCTAGTAATGAAAACTCAGTTGTATTGCGTCCCTCATCTTCAAGACTTACACAACCTGAGGAGGACTTTAATGTAATTCAGCATCCCAAAGAGACTGCTCCAGGGTTTATGCCAGAGAGTTTCATTTGTGAGGACCAGAATGATGAGGATGTGAATGTCAAGCGTATGAAATTTTCTCTGCATGAACTTCCTTGTAGTAGATCTGATTCAGAAAGTTTTTTGGGTTCATCAGGACTTTCAAAAGTAGTAGTTTCTAACCTATCTTCTGCTGTTACTGACCGTGATAGTGAACCACTTGCATTTCGCTTAGTCGAATCATCTAAACAAGGTGTGATATCTAGTTGCTATCTGTTGAAGCATAACATTTTACAGAATAAAAAAGCTGCTAAGGAGGATGTAGATGTTGCAAATTGTAAATCAACAACAGCAGATGAGAATGTTGGTAAAGAGATCTCTGTAAGTAAAGCGGTTTCTTCTCCTGTTTCCCAGGAGAGCTTTGCAAACAGGCTTGTAGTTACAAGTCCATCAATCACTGTTCTGAAGAAGTCTGGGTCTCCTCTAAATCCCGAGGAAATACCGGAAGGGTTTCTATCTTCTAATATGGATATCTCAAATTCATCCTCAAAACTAGACAAAAAGGATCCTCGTACTTTACTTCAGTTTCATATTGTGCAGTTGCTTAGGATGGCAGGATGGTCTATTGAGAAGCGTCAACGGCCTTGTAGGCGTTACATGGAGTCGGTTTATAGGACACCAGAGGGAAAGCCTGTTCGGGAATTTACAAAAGCTTGGAGATTATGTGGTCAGCTTTTGTCTGTCGAGAAATGCAATTTAATCTATGGAGATTGTAAGGAATGGACTGATATTAGTCAATTCTGGTCTGATCTATCCAGTGCACTGATAAATGTTGAAAACATAAAGACGCAGTCAGCGTCTGCTGCTATGTTGGCTTATCAATGGTGGCTTTTGGATCCTTTTGTAATTGTTATATTTTTTGATAGAAAGATTGGTGCCCTGAAAAAGGGAGAGGCAGTGAAAGCAACTTGGAGTTTAGTTTCTAGTAAGTATAAGATGGCATATGCTCCCGTTGATTCAGCTTGGGAGGATACTTCCGCTGCTCATATTGAGCAAAAACATGACCAAGCCTTTCTCTGTGATTCTTCTAGAGTCGCTGGAACCACACTAACTGCTTCTATGGTTAACAACCATGCCTGTAATCAGGAATCTGATGACAACCAGGAAGATAAACATGTTGAAGAACATAATCCCAACAGCATAGGAAATCAATGTAGGAAAATGTCAATGAACAAAAGTAGTATGGATCTAGTCCCTTTACCTGGTTATGGATTGGATAGCGCTGGTACCCTGTCAAGTGCTTCCTCTTTTAATATTCTTACAACCTCTGGAAATTTGAACCAGATACCTGGAGGTTCTAAAGTGAATGCTGTTCATCAAGCTAAAATTAGAAGTTCCAAAAGCTTTGATAAACAGATTTCAGAAAATTATCTGGAAGCAGATAAAAGAATCCATGGAGATGTGGCAATGGACATGCCCAAGGAAAATAATACATATGGTGTAAGCCATGGCCTGGTTCGTTCTCATGACTCAGAGGCTATTCAACAGTCTGAATGTAGTGAGGAAGAGGGCAGGAAAATCTCAATAGCTTCTGTATTTGGGAAAGATAACACATATTCTACTACTAATGTTTTTCTTAAAAAGAAAATGCGGAGGAAGTGCAAAAGGGTATCTGAAATCAAACTGAGTATGTTATACCATAATGACATGCTGAGCTCAACTGTTACTGACCAGGTGCAGTCTCTGAATGGTGATGCATGTGGCAGTCAGTTAGGGTTGAAAGAGGTCCAGGATTATCTAGTTGAGAATTCAGGAAATAAAAGAAATCCCAGGAAGTTGTCATCTGTCAGTGCAATCCAGCAACATATTAGGAAAACAAACTTCTCCATAACTGGAACAAATAAGTCCAACGGATGCCAGATTAAAGATGATGATCTATTGGTGTCGGCTATATTCAGGAACAAGGACTTCAGCCCAAAGACAATCCGTGGTAAATCTAAAGCTAAATCCTGGAAATCAAGGGGCCGTAGGAAGCTCAAAAGCCAAAGGGGCCGTTGCAGGTTGCTACCAAGGAACCCTTGTAATGGAGGGAAACACAATAAAGATGGCAAGAGGTATTTGGGGACAAGGACAGTCTTGTCCTGGTTGATTGAGAATGGGGTCATATCTTCAAATGATGTGATTCAATACCGAAACCCTAAAGATAATTCTGTCCTTAAGGATGGTAGGATCACTATAGATGGTATTATTTGTAAGTGTTGTGGTAAGGTGCTTACATTATCAGAGTTCAAGTTTCATGCTGGGTTTACACTGAATCGCCCTTGCTTGAATCTTTTCATGGAGTCTGGTGAGCCCTTTACACTGTGCCTTCTTCAAGCTTGGTCAGCTGAATACAAAGCCAGGAAAAGTCAGAATCAGGCTGTGCGTGTCGATGATAATGATAGAAATGATGACTCCTGCGGATTGTGTGGTGAGGGGGGTGAGCTGATATGTTGTGATAGCTGTCCGTCTACTTTTCACCTGGCTTGTTTGTCCACTCAGGAAATCCCTGATGGCAATTGGTACTGCACAAACTGCACGTGTCGGATATGTGGAGATTTGGTCACCGATAAAGAGGCTTCAGATGCGTATAATTCATTACAATGTTCACAGTGTGAACATAAATATCATGTGAAATGCCTGAGAGAGAGAGATAAACAAGAAGTGGTAGTTTCAGACGCTTGGTTTTGCAGTCAGAGTTGTCAGGAGGTATACTCTGGTCTCCAATCTCAGATGGGGTTAGTTAATCAAGTTGCTGATGGCTTCTCATGGATGCTTCTTAGATGCATCCACGATGACCAAAAGGTTCATTCTGCCCAGTGGTTTGCCCTAAAGGCAGTATGCAATACCAAATTAGCCGTTGCCCTTACCATCATGGAGGAGTGTTTTTTGTCTATGTTGGATCCAAGAACAGGCATACACATGTTACCCCAAGTTATATACAACTGGGGGTCTGATTTTGCTCGTCTAAATTTTCAAGGGTTTTACACTCTTGTATTGGAGAAACAGGATGTGTTGATATCTGTAGCATCTATCAGGGTGCATGGAACTACAGTTGCAGAGATGCCTCTAATTGCAACTTGCAGTCGGTATCGTCGTCAGGGAATGTGCCGACTCCTTGTGAGTGCAATTCAAGAGATGTTAATGTCTATCAAGGTAGAAAAGCTTGTGGTAGCAGCCATTCCAGATGTGGTGGAGACATGGACTAAGGGCTTTGGATTCATTCCTGTAGATGACATTGAAAAGCAAAGATTGAACAAAATCAACTTGATGGTTTTTCCTGGGACGGTGTTACTTGAAAAATCCTTGTACGGGAAGGACAACATTGAAGGTCTGCGTGATCAATCAACTTTAGCAACAGATGAATCAATCAAAGTAGGTGTCTGTTATGAAGGAATAGCTATGGCTGAATCGTTGCCACAAGATGTTGGAAACATAACTACCAACAAAGTTGATGCTAAGTCAGAACATGTACTTGTGGAGGGAAAAAATCACCCAGACTATAGGGCTGGCTGTGAAGCCAACAGAGATGATAATACTCAAGCTGTTGACACTGCATTAGGAGCCAAAGAATCAACAGAAATAAGTAACCATTTTAGAGAAGAGAAGATCATCCAGTTGAAGGTTCCAGGTGGCTCAGAGAAATCTATTGAAGGAAACAATATGCAGGAATTGAGAACGAGCAACAAAATGCAAATGGCAAGTGAGTCAGTACAGCAATCTAGTGAAAACTGTTGTGCTAACAAAGATGGTACTGAATCAGGTGTAAGAATTATGGAGGACATGAATATCAAAATAGGTGAAGTTCAGGAAAATGCTTTGCAGGGCCATATTTCAAATTTGTCCTGCAAAACATTTTTAGGCAGCAATTTTGATACGGATTCCAATGTTGAATGCTCAGTGATGTATGATGAAACAGCTTTTTTTGGAACATTTGCAAAGTCTGCAAGCTGA 4254 0.4048 MSSSKEIEDLCYDNFEGSNEERQIFTEVFSGNDIFQCSQRCLVSGVINFEHESTKNTFKSFCSSNENSVVLRPSSSRLTQPEEDFNVIQHPKETAPGFMPESFICEDQNDEDVNVKRMKFSLHELPCSRSDSESFLGSSGLSKVVVSNLSSAVTDRDSEPLAFRLVESSKQGVISSCYLLKHNILQNKKAAKEDVDVANCKSTTADENVGKEISVSKAVSSPVSQESFANRLVVTSPSITVLKKSGSPLNPEEIPEGFLSSNMDISNSSSKLDKKDPRTLLQFHIVQLLRMAGWSIEKRQRPCRRYMESVYRTPEGKPVREFTKAWRLCGQLLSVEKCNLIYGDCKEWTDISQFWSDLSSALINVENIKTQSASAAMLAYQWWLLDPFVIVIFFDRKIGALKKGEAVKATWSLVSSKYKMAYAPVDSAWEDTSAAHIEQKHDQAFLCDSSRVAGTTLTASMVNNHACNQESDDNQEDKHVEEHNPNSIGNQCRKMSMNKSSMDLVPLPGYGLDSAGTLSSASSFNILTTSGNLNQIPGGSKVNAVHQAKIRSSKSFDKQISENYLEADKRIHGDVAMDMPKENNTYGVSHGLVRSHDSEAIQQSECSEEEGRKISIASVFGKDNTYSTTNVFLKKKMRRKCKRVSEIKLSMLYHNDMLSSTVTDQVQSLNGDACGSQLGLKEVQDYLVENSGNKRNPRKLSSVSAIQQHIRKTNFSITGTNKSNGCQIKDDDLLVSAIFRNKDFSPKTIRGKSKAKSWKSRGRRKLKSQRGRCRLLPRNPCNGGKHNKDGKRYLGTRTVLSWLIENGVISSNDVIQYRNPKDNSVLKDGRITIDGIICKCCGKVLTLSEFKFHAGFTLNRPCLNLFMESGEPFTLCLLQAWSAEYKARKSQNQAVRVDDNDRNDDSCGLCGEGGELICCDSCPSTFHLACLSTQEIPDGNWYCTNCTCRICGDLVTDKEASDAYNSLQCSQCEHKYHVKCLRERDKQEVVVSDAWFCSQSCQEVYSGLQSQMGLVNQVADGFSWMLLRCIHDDQKVHSAQWFALKAVCNTKLAVALTIMEECFLSMLDPRTGIHMLPQVIYNWGSDFARLNFQGFYTLVLEKQDVLISVASIRVHGTTVAEMPLIATCSRYRRQGMCRLLVSAIQEMLMSIKVEKLVVAAIPDVVETWTKGFGFIPVDDIEKQRLNKINLMVFPGTVLLEKSLYGKDNIEGLRDQSTLATDESIKVGVCYEGIAMAESLPQDVGNITTNKVDAKSEHVLVEGKNHPDYRAGCEANRDDNTQAVDTALGAKESTEISNHFREEKIIQLKVPGGSEKSIEGNNMQELRTSNKMQMASESVQQSSENCCANKDGTESGVRIMEDMNIKIGEVQENALQGHISNLSCKTFLGSNFDTDSNVECSVMYDETAFFGTFAKSAS 1417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2366g00019 1417 SMART PHD_3 948 1002 IPR001965 -
Gabi2366g00019 1417 SMART PHD_3 906 947 IPR001965 -
Gabi2366g00019 1417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 948 1004 IPR013083 -
Gabi2366g00019 1417 Pfam PHD-finger 907 948 IPR019787 -
Gabi2366g00019 1417 ProSiteProfiles Zinc finger PHD-type profile. 904 949 IPR019787 -
Gabi2366g00019 1417 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1057 1180 IPR016181 -
Gabi2366g00019 1417 MobiDBLite consensus disorder prediction 467 490 - -
Gabi2366g00019 1417 CDD PHD1_AIRE 907 946 - -
Gabi2366g00019 1417 MobiDBLite consensus disorder prediction 752 769 - -
Gabi2366g00019 1417 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1057 1204 IPR000182 GO:0016747
Gabi2366g00019 1417 PANTHER PHD FINGER FAMILY PROTEIN 4 1347 - -
Gabi2366g00019 1417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 897 947 IPR013083 -
Gabi2366g00019 1417 Pfam Tify domain binding domain 829 879 IPR032308 -
Gabi2366g00019 1417 SUPERFAMILY FYVE/PHD zinc finger 892 947 IPR011011 -
Gabi2366g00019 1417 MobiDBLite consensus disorder prediction 748 769 - -
Gabi2366g00019 1417 MobiDBLite consensus disorder prediction 470 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2366g00019 Gabi-Chr2366 281638 291659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2366g00019 1 408 PHD Transcription Factor Family AT3G14980 34.450 2.81e-50 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi2366g00019 TDBD 2.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2366g00019 - - lja:Lj3g3v1061160.1 2022.28