Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2366g00016 ATGTCGCATTCGTCGGGAAAACCCGTTTCCGATGTGGTCGGGTTCGACGCCATCGCCGATCGGTTCCGCGACACTTTGAACTGCGAGGTCAACAAGCCGGACTACCGAGAACTCGATCTGGGTTCGCCCGTTTCGCCATTGCGGACCCGAGGACCCGCTGCCAGTAGCAGTTCAAGTTCTTCTGGATCCTTCTCTGGCCGAAACGGGCACAACCCGGTTCCCAAAAGATCCGATTCGGCACCCAACAACAACAACAATAACTCCGGCGAGCTCTCCGGCTCCAGCGAGAACAGCCCCACCGCCGCGTCGGAGAGCCAGAGATCCGCGGGGAATGCGCGGGGACTCAAGCCGGGTCATGCGAGATCCGATTCCGGATCCGCTTTACCACCGTTAATCTATTCGGGTCAGACCGTGAACTCGCCGCCGCTGAATGTTCTCCCCACCGGAAACATATGCCCCTCCGGCAGGATCCTGAAGACGGGCATGGCGGCGAATCGGGGCTCCAGAACCGATGTTCTGGGCTCCGGCATGGGGAACTATGGCCATGGGAGCATAATGCGGGGCGCCGCCGCAGCCGCCAAGGTGGAGACGGCGGGTGCGCCGGTTTCAAAGTGCAGCATTGGCAATGAGTCTGGGAGGAGAGGAGTTCAGAATGTGGATCCAGAAGAGTTGAAGAGGGTAGGGAATGAGCATTACAAAAAGGGTCACTTTGCAGATGCATTGAGTCTTTATGATAAGGCAATTGCGATGTCGCCGGCTAGTGCCGCCTACCGGAGCAACCGTGCCGCGGCGTTGACGGGTTTGGGACGGCTGGGGGAGGCGGTGAGGGAATGTGAGGAGGCTGTGAGGTTGGATCCTAATTATCTTAGGGCTCATCAGCGTTTGGCTTCTCTTTTCCTTAGATTAGGACAAGTTGAGAATGCAAGGAAGCACCTTTGTTTTCCTGGGCAGCAGTCGGATCCGTCTGAGATGCAGAAGTTGCAAATGGTGGAAAAGCATATCAGCAAATGTGCTGATGTTCGGAGGATAAGGGATTGGAAAAGTGTTCTGAGGGAAGTTGATGCTGCTATTGCTACTGGAGCGGACTCTTCTCCTCAGCTCTTTATGTGTAGAGCAGAAGCACTTTTGAAGCTCCACCAAATCGATGATGCAGAATCAATTTTGTTACACGTTCCCAAATCAGAACCACATACTAATTCCTCTTCTCAAGCAAGATTCTTTGGGATGCTTTCTGAAGCTTATTCCTACTTTGTTAGAGCTCAGATTGAGATGACATTGGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGGCAGTCAGATTGATCCCCGAAATGTTGAAGTTGCTGTTTTGCTCAACAATGTAAGGATGGTGGCAAGAGCTCGAGTGCGTGGCAATGATCTTTTTAAATCTGAAAGGTTCACTGAAGCTTGCTCAGCATATGGGGAGGGTTTGAGACTTGACCCTTCAAATTCTGTTCTATATTGCAATAGAGCAGCGTGTTGGTTTAAGCTTGGTCAATGGGAAAGATCTATTGAAGACTCCAACCAAGCTTTAAATATCCAACCAAATTACATGAAAGCCCTTCTTCGAAGGGCTGCATCAAACAGCAAGCTAGAAAGGTGGGAAGAAGCGGTCAAAGATTATGAGGTCTTGCGGAGAGAACTTCCAAATGACAATGAAGTTGCTGAAGCTCTTTTTCATGCTCAAGTTGCACTAAAGAAATCACGTGGGGAAGAAGTATATAATTTAAAATTTGGCGGTGAAGTGGAAGAAGTATCAGGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCAGGTGTTTCTGTTGTCCATTTTGAAATTGCATCCAACTCCCAATGCAAGCAAATATCTCCATTTGTCGATACACTATGTGGTCGATATCCATCTATTAACTTCCTCAAGGTGGATATTCAAGAAAGCCCAACAGTTGCAACTGCTGAGAATGTTAGGATTGTTCCAACCTTCAAGATATACAAAAATGGCAGTCGAGTGAAGGAAATTGTATGCCCTAGTCGTGACATGTTGGAACACTCTGTGAGGCATTACAGCTTTTAG 2082 0.4923 MSHSSGKPVSDVVGFDAIADRFRDTLNCEVNKPDYRELDLGSPVSPLRTRGPAASSSSSSSGSFSGRNGHNPVPKRSDSAPNNNNNNSGELSGSSENSPTAASESQRSAGNARGLKPGHARSDSGSALPPLIYSGQTVNSPPLNVLPTGNICPSGRILKTGMAANRGSRTDVLGSGMGNYGHGSIMRGAAAAAKVETAGAPVSKCSIGNESGRRGVQNVDPEELKRVGNEHYKKGHFADALSLYDKAIAMSPASAAYRSNRAAALTGLGRLGEAVRECEEAVRLDPNYLRAHQRLASLFLRLGQVENARKHLCFPGQQSDPSEMQKLQMVEKHISKCADVRRIRDWKSVLREVDAAIATGADSSPQLFMCRAEALLKLHQIDDAESILLHVPKSEPHTNSSSQARFFGMLSEAYSYFVRAQIEMTLGRFENAVTAAEKGSQIDPRNVEVAVLLNNVRMVARARVRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDSNQALNIQPNYMKALLRRAASNSKLERWEEAVKDYEVLRRELPNDNEVAEALFHAQVALKKSRGEEVYNLKFGGEVEEVSGLEQFRAAISLPGVSVVHFEIASNSQCKQISPFVDTLCGRYPSINFLKVDIQESPTVATAENVRIVPTFKIYKNGSRVKEIVCPSRDMLEHSVRHYSF 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2366g00016 693 FunFam TPR repeat-containing thioredoxin TTL4 585 692 - -
Gabi2366g00016 693 SUPERFAMILY Thioredoxin-like 496 691 IPR036249 -
Gabi2366g00016 693 MobiDBLite consensus disorder prediction 27 133 - -
Gabi2366g00016 693 Pfam Tetratricopeptide repeat 414 445 IPR019734 GO:0005515
Gabi2366g00016 693 Gene3D Glutaredoxin 586 692 - -
Gabi2366g00016 693 Pfam Tetratricopeptide repeat 228 287 - -
Gabi2366g00016 693 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 26 690 IPR044534 -
Gabi2366g00016 693 SMART tpr_5 459 492 IPR019734 GO:0005515
Gabi2366g00016 693 SMART tpr_5 413 446 IPR019734 GO:0005515
Gabi2366g00016 693 SMART tpr_5 221 254 IPR019734 GO:0005515
Gabi2366g00016 693 SMART tpr_5 527 560 IPR019734 GO:0005515
Gabi2366g00016 693 SMART tpr_5 255 288 IPR019734 GO:0005515
Gabi2366g00016 693 SMART tpr_5 365 398 IPR019734 GO:0005515
Gabi2366g00016 693 SMART tpr_5 493 526 IPR019734 GO:0005515
Gabi2366g00016 693 CDD TRX_family 598 685 - -
Gabi2366g00016 693 ProSiteProfiles TPR repeat profile. 493 526 IPR019734 GO:0005515
Gabi2366g00016 693 ProSiteProfiles TPR repeat profile. 413 446 IPR019734 GO:0005515
Gabi2366g00016 693 Pfam Thioredoxin 599 684 IPR013766 -
Gabi2366g00016 693 ProSiteProfiles TPR repeat profile. 221 254 IPR019734 GO:0005515
Gabi2366g00016 693 SUPERFAMILY TPR-like 342 456 IPR011990 GO:0005515
Gabi2366g00016 693 SUPERFAMILY HCP-like 223 554 - -
Gabi2366g00016 693 Gene3D Tetratricopeptide repeat domain 219 579 IPR011990 GO:0005515
Gabi2366g00016 693 MobiDBLite consensus disorder prediction 49 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2366g00016 Gabi-Chr2366 233837 237787 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2366g00016 458 603 U-box Gene Family AT3G07370 28.962 1.87e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2366g00016 - - gmx:100795358 1086.63