Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2366g00015 ATGTCGCATTCGTCGGGAAAACCCGTTTCCGATGTGGTCGGGTTCGACGCCATCGCCGATCGGTTCCGCGACACTTTGAACTGCGAGGTCAACAAGCCGGACTACCGAGAACTCGATCTGGGTTCGCCCGTTTCGCCATTGCGGACCCGAGGACCCGCTGCCAGTAGCAGTTCAAGTTCTTCTGGATCCTTCTCTGGCCGAAACGGGCACAACCCGGTTCCCAAAAGATCCGATTCGGCACCCAACAACAACAACAATAACTCCGGCGAGCTCTCCGGCTCCAGCGAGAACAGCCCCACCGCCGCGTCGGAGAGCCAGAGATCCGCGGGGAATGCGCGGGGACTCAAGCCGGGTCATGCGAGATCCGATTCCGGATCCGCTTTACCACCGTTAATCTATTCGGGTCAGACCGTGAACTCGCCGCCGCTGAATGTTCTCCCCACCGGAAACATATGCCCCTCCGGCAGGATCCTGAAGACGGGCATGGCGGCGAATCGGGGCTCCAGAACCGATGTTCTGGGCTCCGGCATGGGGAACTATGGCCATGGGAGCATAATGCGGGGCGCCGCCGCAGCCGCCAAGGTGGAGACGGCGGGTGCGCCGAATGTGGATCCAGAAGAGTTGAAGAGGGTAGGGAATGAGCATTACAAAAAGGGTCACTTTGCAGATGCATTGAGTCTTTATGATAAGGCAATTGCGATGTCGCCGGCTAGTGCCGCCTACCGGAGCAACCGTGCCGCGGCGTTGACGGGTTTGGGACGGCTGGGGGAGGCGGTGAGGGAATGTGAGGAGGCTGTGAGGTTGGATCCTAATTATCTTAGGGCTCATCAGCGTTTGGCTTCTCTTTTCCTTAGATTAGGACAAGTTGAGAATGCAAGGAAGCACCTTTGTTTTCCTGGGCAGCAGTCGGATCCGTCTGAGATGCAGAAGTTGCAAATGGTGGAAAAGCATATCAGCAAATGTGCTGATGTTCGGAGGATAAGGGATTGGAAAAGTGTTCTGAGGGAAGTTGATGCTGCTATTGCTACTGGAGCGGACTCTTCTCCTCAGCTCTTTATGTGTAGAGCAGAAGCACTTTTGAAGCTCCACCAAATCGATGATGCAGAATCAATTTTGTTACACGTTCCCAAATCAGAACCACATACTAATTCCTCTTCTCAAGCAAGATTCTTTGGGATGCTTTCTGAAGCTTATTCCTACTTTGTTAGAGCTCAGATTGAGATGACATTGGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGGCAGTCAGATTGATCCCCGAAATGTTGAAGTTGCTGTTTTGCTCAACAATGTAAGGATGGTGGCAAGAGCTCGAGTGCGTGGCAATGATCTTTTTAAATCTGAAAGGTTCACTGAAGCTTGCTCAGCATATGGGGAGGGTTTGAGACTTGACCCTTCAAATTCTGTTCTATATTGCAATAGAGCAGCGTGTTGGTTTAAGCTTGGTCAATGGGAAAGATCTATTGAAGACTCCAACCAAGCTTTAAATATCCAACCAAATTACATGAAAGCCCTTCTTCGAAGGGCTGCATCAAACAGCAAGCTAGAAAGGTGGGAAGAAGCGGTCAAAGATTATGAGGTCTTGCGGAGAGAACTTCCAAATGACAATGAAGTTGCTGAAGCTCTTTTTCATGCTCAAGTTGCACTAAAGAAATCACGTGGGGAAGAAGTATATAATTTAAAATTTGGCGGTGAAGTGGAAGAAGTATCAGGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCAGGTGTTTCTGTTGTCCATTTTGAAATTGCATCCAACTCCCAATGCAAGCAAATATCTCCATTTGTCGATACACTATGTGGTCGATATCCATCTATTAACTTCCTCAAGGTGGATATTCAAGAAAGCCCAACAGTTGCAACTGCTGAGAATGTTAGGATTGTTCCAACCTTCAAGATATACAAAAATGGCAGTCGAGTGAAGGAAATTGTATGCCCTAGTCGTGACATGTTGGAACACTCTGTGAGGCATTACAGCTTTTAG 2034 0.4921 MSHSSGKPVSDVVGFDAIADRFRDTLNCEVNKPDYRELDLGSPVSPLRTRGPAASSSSSSSGSFSGRNGHNPVPKRSDSAPNNNNNNSGELSGSSENSPTAASESQRSAGNARGLKPGHARSDSGSALPPLIYSGQTVNSPPLNVLPTGNICPSGRILKTGMAANRGSRTDVLGSGMGNYGHGSIMRGAAAAAKVETAGAPNVDPEELKRVGNEHYKKGHFADALSLYDKAIAMSPASAAYRSNRAAALTGLGRLGEAVRECEEAVRLDPNYLRAHQRLASLFLRLGQVENARKHLCFPGQQSDPSEMQKLQMVEKHISKCADVRRIRDWKSVLREVDAAIATGADSSPQLFMCRAEALLKLHQIDDAESILLHVPKSEPHTNSSSQARFFGMLSEAYSYFVRAQIEMTLGRFENAVTAAEKGSQIDPRNVEVAVLLNNVRMVARARVRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDSNQALNIQPNYMKALLRRAASNSKLERWEEAVKDYEVLRRELPNDNEVAEALFHAQVALKKSRGEEVYNLKFGGEVEEVSGLEQFRAAISLPGVSVVHFEIASNSQCKQISPFVDTLCGRYPSINFLKVDIQESPTVATAENVRIVPTFKIYKNGSRVKEIVCPSRDMLEHSVRHYSF 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2366g00015 677 Pfam Tetratricopeptide repeat 212 271 - -
Gabi2366g00015 677 SUPERFAMILY TPR-like 205 433 IPR011990 GO:0005515
Gabi2366g00015 677 MobiDBLite consensus disorder prediction 27 133 - -
Gabi2366g00015 677 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 26 674 IPR044534 -
Gabi2366g00015 677 FunFam TPR repeat-containing thioredoxin TTL4 569 676 - -
Gabi2366g00015 677 SUPERFAMILY Thioredoxin-like 480 675 IPR036249 -
Gabi2366g00015 677 CDD TRX_family 582 669 - -
Gabi2366g00015 677 ProSiteProfiles TPR repeat profile. 477 510 IPR019734 GO:0005515
Gabi2366g00015 677 ProSiteProfiles TPR repeat profile. 397 430 IPR019734 GO:0005515
Gabi2366g00015 677 SMART tpr_5 477 510 IPR019734 GO:0005515
Gabi2366g00015 677 SMART tpr_5 349 382 IPR019734 GO:0005515
Gabi2366g00015 677 SMART tpr_5 443 476 IPR019734 GO:0005515
Gabi2366g00015 677 SMART tpr_5 397 430 IPR019734 GO:0005515
Gabi2366g00015 677 SMART tpr_5 205 238 IPR019734 GO:0005515
Gabi2366g00015 677 SMART tpr_5 239 272 IPR019734 GO:0005515
Gabi2366g00015 677 SMART tpr_5 511 544 IPR019734 GO:0005515
Gabi2366g00015 677 ProSiteProfiles TPR repeat profile. 205 238 IPR019734 GO:0005515
Gabi2366g00015 677 Gene3D Tetratricopeptide repeat domain 203 563 IPR011990 GO:0005515
Gabi2366g00015 677 MobiDBLite consensus disorder prediction 49 110 - -
Gabi2366g00015 677 Gene3D Glutaredoxin 570 676 - -
Gabi2366g00015 677 Pfam Tetratricopeptide repeat 398 429 IPR019734 GO:0005515
Gabi2366g00015 677 Pfam Thioredoxin 583 668 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2366g00015 Gabi-Chr2366 233837 237787 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2366g00015 442 587 U-box Gene Family AT3G07370 28.962 1.80e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2366g00015 - - gmx:100795358 1076.23