Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2366g00014 ATGTCGCATTCGTCGGGAAAACCCGTTTCCGATGTGGTCGGGTTCGACGCCATCGCCGATCGGTTCCGCGACACTTTGAACTGCGAGGTCAACAAGCCGGACTACCGAGAACTCGATCTGGGTTCGCCCGTTTCGCCATTGCGGACCCGAGGACCCGCTGCCAGTAGCAGTTCAAGTTCTTCTGGATCCTTCTCTGGCCGAAACGGGCACAACCCGGTTCCCAAAAGATCCGATTCGGCACCCAACAACAACAACAATAACTCCGGCGAGCTCTCCGGCTCCAGCGAGAACAGCCCCACCGCCGCATCCGATTCCGGATCCGCTTTACCACCGTTAATCTATTCGGGTCAGACCGTGAACTCGCCGCCGCTGAATGTTCTCCCCACCGGAAACATATGCCCCTCCGGCAGGATCCTGAAGACGGGCATGGCGGCGAATCGGGGCTCCAGAACCGATGTTCTGGGCTCCGGCATGGGGAACTATGGCCATGGGAGCATAATGCGGGGCGCCGCCGCAGCCGCCAAGGTGGAGACGGCGGGTGCGCCGGTTTCAAAGTGCAGCATTGGCAATGAGTCTGGGAGGAGAGGAGTTCAGAATGTGGATCCAGAAGAGTTGAAGAGGGTAGGGAATGAGCATTACAAAAAGGGTCACTTTGCAGATGCATTGAGTCTTTATGATAAGGCAATTGCGATGTCGCCGGCTAGTGCCGCCTACCGGAGCAACCGTGCCGCGGCGTTGACGGGTTTGGGACGGCTGGGGGAGGCGGTGAGGGAATGTGAGGAGGCTGTGAGGTTGGATCCTAATTATCTTAGGGCTCATCAGCGTTTGGCTTCTCTTTTCCTTAGATTAGGACAAGTTGAGAATGCAAGGAAGCACCTTTGTTTTCCTGGGCAGCAGTCGGATCCGTCTGAGATGCAGAAGTTGCAAATGGTGGAAAAGCATATCAGCAAATGTGCTGATGTTCGGAGGATAAGGGATTGGAAAAGTGTTCTGAGGGAAGTTGATGCTGCTATTGCTACTGGAGCGGACTCTTCTCCTCAGCTCTTTATGTGTAGAGCAGAAGCACTTTTGAAGCTCCACCAAATCGATGATGCAGAATCAATTTTGTTACACGTTCCCAAATCAGAACCACATACTAATTCCTCTTCTCAAGCAAGATTCTTTGGGATGCTTTCTGAAGCTTATTCCTACTTTGTTAGAGCTCAGATTGAGATGACATTGGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGGCAGTCAGATTGATCCCCGAAATGTTGAAGTTGCTGTTTTGCTCAACAATGTAAGGATGGTGGCAAGAGCTCGAGTGCGTGGCAATGATCTTTTTAAATCTGAAAGGTTCACTGAAGCTTGCTCAGCATATGGGGAGGGTTTGAGACTTGACCCTTCAAATTCTGTTCTATATTGCAATAGAGCAGCGTGTTGGTTTAAGCTTGGTCAATGGGAAAGATCTATTGAAGACTCCAACCAAGCTTTAAATATCCAACCAAATTACATGAAAGCCCTTCTTCGAAGGGCTGCATCAAACAGCAAGCTAGAAAGGTGGGAAGAAGCGGTCAAAGATTATGAGGTCTTGCGGAGAGAACTTCCAAATGACAATGAAGTTGCTGAAGCTCTTTTTCATGCTCAAGTTGCACTAAAGAAATCACGTGGGGAAGAAGTATATAATTTAAAATTTGGCGGTGAAGTGGAAGAAGTATCAGGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCAGGTGTTTCTGTTGTCCATTTTGAAATTGCATCCAACTCCCAATGCAAGCAAATATCTCCATTTGTCGATACACTATGTGGTCGATATCCATCTATTAACTTCCTCAAGGTGGATATTCAAGAAAGCCCAACAGTTGCAACTGCTGAGAATGTTAGGATTGTTCCAACCTTCAAGATATACAAAAATGGCAGTCGAGTGAAGGAAATTGTATGCCCTAGTCGTGACATGTTGGAACACTCTGTGAGGCATTACAGCTTTTAG 2025 0.4869 MSHSSGKPVSDVVGFDAIADRFRDTLNCEVNKPDYRELDLGSPVSPLRTRGPAASSSSSSSGSFSGRNGHNPVPKRSDSAPNNNNNNSGELSGSSENSPTAASDSGSALPPLIYSGQTVNSPPLNVLPTGNICPSGRILKTGMAANRGSRTDVLGSGMGNYGHGSIMRGAAAAAKVETAGAPVSKCSIGNESGRRGVQNVDPEELKRVGNEHYKKGHFADALSLYDKAIAMSPASAAYRSNRAAALTGLGRLGEAVRECEEAVRLDPNYLRAHQRLASLFLRLGQVENARKHLCFPGQQSDPSEMQKLQMVEKHISKCADVRRIRDWKSVLREVDAAIATGADSSPQLFMCRAEALLKLHQIDDAESILLHVPKSEPHTNSSSQARFFGMLSEAYSYFVRAQIEMTLGRFENAVTAAEKGSQIDPRNVEVAVLLNNVRMVARARVRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDSNQALNIQPNYMKALLRRAASNSKLERWEEAVKDYEVLRRELPNDNEVAEALFHAQVALKKSRGEEVYNLKFGGEVEEVSGLEQFRAAISLPGVSVVHFEIASNSQCKQISPFVDTLCGRYPSINFLKVDIQESPTVATAENVRIVPTFKIYKNGSRVKEIVCPSRDMLEHSVRHYSF 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2366g00014 674 ProSiteProfiles TPR repeat profile. 474 507 IPR019734 GO:0005515
Gabi2366g00014 674 SUPERFAMILY HCP-like 204 535 - -
Gabi2366g00014 674 Gene3D Glutaredoxin 567 673 - -
Gabi2366g00014 674 Gene3D Tetratricopeptide repeat domain 200 560 IPR011990 GO:0005515
Gabi2366g00014 674 SUPERFAMILY Thioredoxin-like 477 672 IPR036249 -
Gabi2366g00014 674 MobiDBLite consensus disorder prediction 49 114 - -
Gabi2366g00014 674 Pfam Tetratricopeptide repeat 395 426 IPR019734 GO:0005515
Gabi2366g00014 674 ProSiteProfiles TPR repeat profile. 202 235 IPR019734 GO:0005515
Gabi2366g00014 674 SMART tpr_5 236 269 IPR019734 GO:0005515
Gabi2366g00014 674 SMART tpr_5 346 379 IPR019734 GO:0005515
Gabi2366g00014 674 SMART tpr_5 474 507 IPR019734 GO:0005515
Gabi2366g00014 674 SMART tpr_5 394 427 IPR019734 GO:0005515
Gabi2366g00014 674 SMART tpr_5 202 235 IPR019734 GO:0005515
Gabi2366g00014 674 SMART tpr_5 508 541 IPR019734 GO:0005515
Gabi2366g00014 674 SMART tpr_5 440 473 IPR019734 GO:0005515
Gabi2366g00014 674 FunFam TPR repeat-containing thioredoxin TTL4 566 673 - -
Gabi2366g00014 674 CDD TRX_family 579 666 - -
Gabi2366g00014 674 Pfam Thioredoxin 580 665 IPR013766 -
Gabi2366g00014 674 Pfam Tetratricopeptide repeat 209 268 - -
Gabi2366g00014 674 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 26 671 IPR044534 -
Gabi2366g00014 674 MobiDBLite consensus disorder prediction 27 114 - -
Gabi2366g00014 674 ProSiteProfiles TPR repeat profile. 394 427 IPR019734 GO:0005515
Gabi2366g00014 674 SUPERFAMILY TPR-like 323 437 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2366g00014 Gabi-Chr2366 233837 237787 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2366g00014 439 584 U-box Gene Family AT3G07370 28.962 1.59e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2366g00014 - - gmx:100795358 1077.39