Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2362g00033 ATGGAAGCCAGTTTCACTGTGCAGAAATCTGTTGCTTGTAAGTTTCTCAAACCAGGGCTTCTGGATAAGGCACCGAAGGTGGTTCGAGTTTCAGTGATGGATCCCTATGCCACCGACGATGAAGCTCAAGATGAAGGAATGACACACCATCCTACAGAGAAGAAGGTTGTGAATGAGATCAGAATGGTGGAGCGCCAAACTTGTTTAACAGGTGTGTCTTCAAGAAAAACCACCGCCACGAAGCTTCGAGGAGTTCGTGATCGTGGGGGGAGATGGGGTGCAGAAATCAGAGATCCTGTGAAGCAGACGAGGATGTGGTTGGGTACCTATGACACCGCCGAAGAGGCTGCTATGGCTTATGACAGAGAGGCTATTCGTCTCAAAGGCTCAGATGCTATTACTAATTTCATCAAACCCCCTGAAAAGAAGAGCGTACTCATGATAAAAGAAGATTTGAACATGGATATAGACATGTACGATGATGTTACTTTCGACAATGTTAACAAAGAATCTGAAGATAGTAGTGTTATAACTACTGAATCTGAATCTGATGAGAATGTGAGTAGTAGTCATGACAGTTTTTCACCTAAAGAATCTCATATGAGTAGTTGTGGTAAAGACTTTCATGATAGTAGTATAGAATCTCCTAATTTGACTTCACCCTCTTCTGCATTTGAATTTATGGCGGATGCTGATGAGGTTTCTCAATCAGAGTCTGAGATCAGACAAGAGCATGGATGGGAATGTGAGATTAGAGAAGACAAAAGTTCGCAATACAGCTTTTTATTTTTAGATTCAAACTCCACGGATTGTTATTTCGATATTAATCAAACTCCTCCTTCGATGTTTTTTGATGAAATGAGTATGCCACAATTTATATATCACGATAAATCCAGTGATATTTCCCTTCCTCTTATTGAGGATTTTGAACCGTGCAATAATGATATAGATACTTATTTCAATTCAACTGAACTTAATTTAGGTAGCCGAGAAATGTAA 999 0.4004 MEASFTVQKSVACKFLKPGLLDKAPKVVRVSVMDPYATDDEAQDEGMTHHPTEKKVVNEIRMVERQTCLTGVSSRKTTATKLRGVRDRGGRWGAEIRDPVKQTRMWLGTYDTAEEAAMAYDREAIRLKGSDAITNFIKPPEKKSVLMIKEDLNMDIDMYDDVTFDNVNKESEDSSVITTESESDENVSSSHDSFSPKESHMSSCGKDFHDSSIESPNLTSPSSAFEFMADADEVSQSESEIRQEHGWECEIREDKSSQYSFLFLDSNSTDCYFDINQTPPSMFFDEMSMPQFIYHDKSSDISLPLIEDFEPCNNDIDTYFNSTELNLGSREM 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2362g00033 332 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 235 - -
Gabi2362g00033 332 Pfam AP2 domain 81 129 IPR001471 GO:0003700|GO:0006355
Gabi2362g00033 332 MobiDBLite consensus disorder prediction 170 201 - -
Gabi2362g00033 332 CDD AP2 80 136 IPR001471 GO:0003700|GO:0006355
Gabi2362g00033 332 Gene3D AP2/ERF domain 81 138 IPR036955 GO:0003700|GO:0006355
Gabi2362g00033 332 SMART rav1_2 81 143 IPR001471 GO:0003700|GO:0006355
Gabi2362g00033 332 ProSiteProfiles AP2/ERF domain profile. 81 137 IPR001471 GO:0003700|GO:0006355
Gabi2362g00033 332 MobiDBLite consensus disorder prediction 170 209 - -
Gabi2362g00033 332 SUPERFAMILY DNA-binding domain 82 136 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2362g00033 Gabi-Chr2362 243755 244753 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2362g00033 5 218 AP2-EREBP Transcription Factor Family AT3G61630 33.203 1.63e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2362g00033 AP2 2.9e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2362g00033 - - ccaj:109796536 218.394