Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2362g00006 ATGAATTGCTTTCCGTGTTTTACAAAGAGTAAGAGAAGCAATAGCAAGAGGGAGCATGAGCCCATGCCACAGGAAAACGTTATAACAAGAACACCAGATATAAAGAAACCAACTATTCAAGTTGATACATCAAATATTCAAGCACAAAATTTCACTTTCCGGGAGTTAGCAATTGCAACAAAGAATTTCAGGCAAGAGTGCTTGATGGGTGAAGGTGGCTTTGGCAGAGTTTACAAAGGAACATTTCCTGCAACCGGACAGGTGGTAGCTGTGAAGCAACTCGACCGAAATGGGATACAAGGCAGCAAGGAATTTCTGGTTGAGGTTTTGATGTTAAGTCTCTTGAACCATGACAATCTGATCAAACTCACTGGTTATTGTGCTGATGGTGAGCAACGTCTTTTGGTGTATGAATTCATGCCTGGGGGATCTCTAGAAAGGCGTCTTCTCGAGCGCAGACCAGATGAAGCTCCATTAGATTGGTACAGCAGAATGAAAATAGCTTCTGCTGCTGCGAAAGGACTATGGTACTTGCACGACAAGGCCAATCCCCCAGTTATATACCGGGACTTGAAGTCATCGAATATCTTGTTGGATAATGATCATAATGCAAAACTATCTGATTATGGACTGGCCAAACTTGCTGGTAAAGATAAGATGAACATTGTACCTACAAGAGTTATGGGTACCTATGGTTACAGTGCTCCAGAGTATGTAAGAACAGGTAACCTCACCTTGAAATCGGATGTGTACAGTTTTGGAGTTGTCTTGCTAGAGCTCATAACTGGACGACGAGCCATTGACACCACCAAACCAAACGATGAGCAAAACCTAGTCTCATGGGCACAACCCATATTCAGGGAACCAAGAAGATATCCTGATATGGCAGATCCACTTCTGAATAAAAATTTCCCAGAAAAGGATCTGAATCAAGTTGTTGCAATAGCAGCCATGTGTTTACAGGAGGAATCAGCAGCACGTCCTTTGATGAGTGATGTTGTAACTGCTCTCAGTTTTCTTTCCACGGCTCCTCCAGCGGTTGTTCCTGCCCCTCTCCCTCCTGCCACCTCTGCCTCCTCCCAGAAGAGTGCTGCTGGTGAAGGTGAAAGCCAAAGTGACAGTGAGAGTGAAACAGAAACTAACAGCCATAGTTCCAATGAAGAGGAGGATAATAAACAGGTTGTAGCAAGTGCAAAATACCACGAAATTGAGGATGTCTCAGAAACTGAATATGATTATTATGAGAATGAAAACCAACAAAAATATAGTCCACAAGATAACAAGGAGTTTTCCTCCAAGTCAAGCCACAAAAGCAGCACCAGATCAAGGAATGGAACCGTTTCTTCTGGCCGCTCTAGTTCAGTTTCAGAAAATGGAAATGGAAATGGAAATGGAAATGTCTCTACCAGCCGCAAAAGCAGCAGTAGGAAGAAAAATGGTGTAAATAGTAATTTAAGCCAGAAGAGCAGCAAAAAATCAAAGAGCAGTAAGAAATCTTCAGAGAAAAGTTTAAGCCAAAAGAGCAGTAAAAAATCTTCAGTCAAAGTTTCAAGCCACACGACAAGCAATGGCATGAGACCAGAGGATGAAAGCCATTCATCCCTTTCACATAGAGATGTTTCCATAAGCCGTAATAGCAGCAGTGGGGAGTCACGGGGTGAGGGTGTTGTTTATGAGCGTAGCGGACAAGGAAATGTATCTTTTGGCCTAATCAGCAGTGAGAGTGTTCAGTCAGGCCATGATGACTCCGACAAAGAAGGGAGCAACATACATTTATTACATCATAACGGAGATGCTCATCATTTCGATCGTGCCAGCATGGGATCAGATGAGGGAAGTTTCAACCTTTTTGAGCATTCCACTAGCAGGGGATCAGATGAAAGAAGTGTTCATTCGTAA 1899 0.4297 MNCFPCFTKSKRSNSKREHEPMPQENVITRTPDIKKPTIQVDTSNIQAQNFTFRELAIATKNFRQECLMGEGGFGRVYKGTFPATGQVVAVKQLDRNGIQGSKEFLVEVLMLSLLNHDNLIKLTGYCADGEQRLLVYEFMPGGSLERRLLERRPDEAPLDWYSRMKIASAAAKGLWYLHDKANPPVIYRDLKSSNILLDNDHNAKLSDYGLAKLAGKDKMNIVPTRVMGTYGYSAPEYVRTGNLTLKSDVYSFGVVLLELITGRRAIDTTKPNDEQNLVSWAQPIFREPRRYPDMADPLLNKNFPEKDLNQVVAIAAMCLQEESAARPLMSDVVTALSFLSTAPPAVVPAPLPPATSASSQKSAAGEGESQSDSESETETNSHSSNEEEDNKQVVASAKYHEIEDVSETEYDYYENENQQKYSPQDNKEFSSKSSHKSSTRSRNGTVSSGRSSSVSENGNGNGNGNVSTSRKSSSRKKNGVNSNLSQKSSKKSKSSKKSSEKSLSQKSSKKSSVKVSSHTTSNGMRPEDESHSSLSHRDVSISRNSSSGESRGEGVVYERSGQGNVSFGLISSESVQSGHDDSDKEGSNIHLLHHNGDAHHFDRASMGSDEGSFNLFEHSTSRGSDERSVHS 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2362g00006 632 FunFam Serine/threonine-protein kinase PBS1 140 348 - -
Gabi2362g00006 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Gabi2362g00006 632 SUPERFAMILY Protein kinase-like (PK-like) 41 341 IPR011009 -
Gabi2362g00006 632 MobiDBLite consensus disorder prediction 350 395 - -
Gabi2362g00006 632 Pfam Protein kinase domain 65 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2362g00006 632 CDD STKc_IRAK 69 337 - -
Gabi2362g00006 632 MobiDBLite consensus disorder prediction 506 529 - -
Gabi2362g00006 632 Gene3D Transferase(Phosphotransferase) domain 1 140 344 - -
Gabi2362g00006 632 PANTHER OS07G0668900 PROTEIN 3 344 - -
Gabi2362g00006 632 MobiDBLite consensus disorder prediction 578 607 - -
Gabi2362g00006 632 SMART serkin_6 63 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2362g00006 632 MobiDBLite consensus disorder prediction 354 379 - -
Gabi2362g00006 632 MobiDBLite consensus disorder prediction 1 24 - -
Gabi2362g00006 632 ProSiteProfiles Protein kinase domain profile. 63 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2362g00006 632 MobiDBLite consensus disorder prediction 437 490 - -
Gabi2362g00006 632 MobiDBLite consensus disorder prediction 538 552 - -
Gabi2362g00006 632 FunFam probable serine/threonine-protein kinase RLCKVII 35 139 - -
Gabi2362g00006 632 MobiDBLite consensus disorder prediction 408 632 - -
Gabi2362g00006 632 Gene3D Phosphorylase Kinase; domain 1 26 139 - -
Gabi2362g00006 632 MobiDBLite consensus disorder prediction 380 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2362g00006 Gabi-Chr2362 56545 59590 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2362g00006 1 386 Glycoside Hydrolase AT3G07070 59.512 6.95e-166 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gabi2362g00006 Pkinase 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2362g00006 - - gmx:100807682 678.707