Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2362g00005 ATGGGTAAATGTGTGTTGAATTTCACAACATACCCATACGTGGCATTTGGTGAGTGCGGCGGTGTGAACGAGGACATAAACAACTGGGGTGGGGGTGGGGAAGGGTTTCCGACCACTATATGCTGCCGCAATGCTCTCACTGTTTTGTCTGATGCTTTGGCCATGCAAACCTCAAACTCAACAACAGGACAACTCTTTACTTCCCAAGATCAATGGCAGAATTGTAGCCAGTTATTTAATCCACAACAAGGGATGTCACTTCATTCATGTGGTTTTGATAGTTTTTACCTTGGCAGCTCCCAATGTTCTAGCTTATCTCTACAGGAGGCTCAGAGCATACAACAGTACCAAGATGCCTTGGACCAATGCTCCCATTTTGACCATCCATTTGACCAGTCTTGTGCAGATTGTACCAATGCTATATTGAACGTTAGAGATAGTTTATATGCTCCAATATTAGAGAACGGCCCCAATAATACTGAAAGAGCCATATGTGGGGTAGCAGCTGTTGTTGCTGTTGCAGTTGGGAATCCCGGTGACCCATCCCTCAGTGATAAATTCTTTCGGTGCTTGCCATCTTCTTCAGGAGTAAACAAGCCTGGATCTTGGTCAAAACTCCTGTTTAGTGGGGCATTAGCTGCCCTTGCAATATTGCTTATCGTTATTCTGGTAAGATATGTGTCCAAGAAGAAAACTCGTAAGCCAGCTCGCTTGAAAGAGATCACTACGTGGTCTGGACTATACTGGTTCTCCAAAGCTGAAATTGAGAATGCCATGAATTATGGTAATGAAAAGGTAAACCTTGGACGTGGGAGTGCAGGGCAGGTGTACAGAGGTGTTCTGCCCAGTGGTCAAGTTGTGGCCATCAAGCATTTGACTAAAGGTAGCACCTCTGATTCTTTCACTCGAGAAGTTGCAGGTCTTTCCAAGCTTCGTCATCCAAACCTGGTTTGCTTATTTGGCTGCTGCGTTGAAAATGATGAGAGATATTTAGTCTATGAGTTTTGTGCAAACGGGAATCTAGCTCAACATCTCTTGAGAAGAGACAGATGGTTGACATGGGAAACGAGAGTCAGAATTTTGAGAGACTGTTCATTCGCACTCAAGTATCTCCACCATCATATAGAGGGATGTGTTGTCCATAGAGATATAAAGCTTACGAACATCCTCTTGACTGAGAAATACCAAGCAAAACTGTCTGATTTTGGACTGGCAAAGATGATGGGGATGGAAGAGAGCAAGGTTTTTACTGATGTTAGAGGAACAATAGGCTACATGGATCCAGAATACATGAGTAATGCCAAGCTAACCTGTGCCAGTGATGTATACAGTTTTGGTATTGTTGCTTTGCAAATCCTGTCAGGACAGAAAGTCATAGAGTTGGATCTTGATGCCAGAGATCAGCTCACTAGGAAGGCAAGAGATGTGAGTATGGGAAAGCGTCCACTGTCGGATTTTGAAGATCCAAGGCTAAATGGAAAACTTGATAGGGCAGACTTTGAAGCAATCTTACATATTGCAGTCCTGTGTGTTGCCAAATCAAGCAAAGGTCGTCCAACCATTGAGGTTGTTTTTGAGGAGTTGGATAAGGTCTGCAGGGACACGGAAACTAAGATGAAGGCAAAGCAGGATGAGTCCTCATCAACAACAACCAACTCTAGTTCTAAGTCCTCCAAATTGACTCCTCGTTGA 1692 0.4391 MGKCVLNFTTYPYVAFGECGGVNEDINNWGGGGEGFPTTICCRNALTVLSDALAMQTSNSTTGQLFTSQDQWQNCSQLFNPQQGMSLHSCGFDSFYLGSSQCSSLSLQEAQSIQQYQDALDQCSHFDHPFDQSCADCTNAILNVRDSLYAPILENGPNNTERAICGVAAVVAVAVGNPGDPSLSDKFFRCLPSSSGVNKPGSWSKLLFSGALAALAILLIVILVRYVSKKKTRKPARLKEITTWSGLYWFSKAEIENAMNYGNEKVNLGRGSAGQVYRGVLPSGQVVAIKHLTKGSTSDSFTREVAGLSKLRHPNLVCLFGCCVENDERYLVYEFCANGNLAQHLLRRDRWLTWETRVRILRDCSFALKYLHHHIEGCVVHRDIKLTNILLTEKYQAKLSDFGLAKMMGMEESKVFTDVRGTIGYMDPEYMSNAKLTCASDVYSFGIVALQILSGQKVIELDLDARDQLTRKARDVSMGKRPLSDFEDPRLNGKLDRADFEAILHIAVLCVAKSSKGRPTIEVVFEELDKVCRDTETKMKAKQDESSSTTTNSSSKSSKLTPR 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2362g00005 563 Pfam Protein kinase domain 265 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2362g00005 563 SUPERFAMILY Protein kinase-like (PK-like) 241 528 IPR011009 -
Gabi2362g00005 563 Gene3D Phosphorylase Kinase; domain 1 233 335 - -
Gabi2362g00005 563 ProSitePatterns Serine/Threonine protein kinases active-site signature. 379 391 IPR008271 GO:0004672|GO:0006468
Gabi2362g00005 563 Gene3D Transferase(Phosphotransferase) domain 1 336 558 - -
Gabi2362g00005 563 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 60 554 - -
Gabi2362g00005 563 MobiDBLite consensus disorder prediction 536 563 - -
Gabi2362g00005 563 SMART serkin_6 262 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2362g00005 563 MobiDBLite consensus disorder prediction 544 563 - -
Gabi2362g00005 563 FunFam probable receptor-like protein kinase At5g59700 336 547 - -
Gabi2362g00005 563 ProSiteProfiles Protein kinase domain profile. 262 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2362g00005 563 Coils Coil 525 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2362g00005 Gabi-Chr2362 48005 52362 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2362g00005 250 548 Receptor kinase-like Gene Family AT1G16260 36.634 1.67e-56 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Gabi2362g00005 Pkinase 2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2362g00005 - - gmx:100807158 830.476