Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2362g00002 ATGGCGAAGAGCGATGATAGCGGTGGGAAGGCGTTAGAATTGAAGGAGAAGTTGCGGGGACTGATGAAGATTATCGTTGAGGGCGATGACTATACTGTTAACGCCGTTGATGAGGCTATTGCTGCTCTTTCGGCTCTTAAGGATTTCAAGTATGGCAAGTCTTTCTCTGATAAATTGGATGACTTTTCCTTTCCTCCCGAATTTCGATGCCCCATTTCAACACAATTGATGAGCGATCCTGTTATCTTGTCCACTGGACAGACTTATGATCGGCCATTCATCCAGAGGTGGTTGAATGAAGGCCACAGAACATGCCCTCAAACCCAGCAAGTACTCTCTCACTCAATCCTTACACCTAATTACTTGGTCCGAGACATGATTGCACATTGGTGTAGGAAGCATGGAATTGAGCCACCGAAGCCTGTTCAGGACGCCAATGAAGCAGTAACTGATGCTGACAAGGAGCATTTGAATTCACTGCTTCAAAAGTTGTCATTGTCTCTTCCTGATCAGAAAGAAGCTGCAAAAGAGCTTCGGCTGTTAACAAAGCGAATGCCTTCATTTCGAACCCTCTTTGGGCAGCAGTCTAGTGATGTGATTCCGCAGTTGCTCAGTCCATTATCACCTGGCACGGCGTGTATTCACCCTGATCTACATGAGGACTTAATCACAACTGTTCTAAATCTCTCAATTCATGATGATAATAAGAAAGTGTTTGCAGAGGATCCAACTGTCATTTCTCTGCTTATTGATGCCTTGAAATCTGGTACCATTCAAACAAGAAGCAATGCTGCTGCAGCTATTTTCACATTATCAGCACTTGATTCCAACAAGGAGATCATTGGAAAATCTGGAGCTATTAAATATTTGCTCGACCTTTTAGACGAGGGACAGCCAATGGCCATGAAAGATGCTGCTTCAGCCATATTCAACCTATGTCTTGTGCACGAGAATAAAGGGAGGACTGTGCAAGAAGGGGCAGTTCGGGTTATTCTGAACAAGATCGTGGATCACATTCTAGTTGATGAGTTGTTGGCTATACTGGCACTCCTCTCCAGTCATCCTAAGGCTGTTGAAGAAATGGGTGATCTCGGTGCTGTTCCTTTCTTACTGGGTATTTTAAGGGAGAGCACTTCAGAACGCAGCAAGGAAAATTGTGTTGCAATTCTATATACAATCTGTTATAGCGATAGAACAAAGTGGAAGGAAATCAGAGAAGAAGAAAAAGCCAACGGTACACTGTCTAAGCTTGCACAATGTGGAACTTCAAGGGCGAAAAGAAAGGCTAACGGGATTCTTGATAGGCTCAGAAGATCTCCCTCCTTAACACACACTGCTTAG 1341 0.4407 MAKSDDSGGKALELKEKLRGLMKIIVEGDDYTVNAVDEAIAALSALKDFKYGKSFSDKLDDFSFPPEFRCPISTQLMSDPVILSTGQTYDRPFIQRWLNEGHRTCPQTQQVLSHSILTPNYLVRDMIAHWCRKHGIEPPKPVQDANEAVTDADKEHLNSLLQKLSLSLPDQKEAAKELRLLTKRMPSFRTLFGQQSSDVIPQLLSPLSPGTACIHPDLHEDLITTVLNLSIHDDNKKVFAEDPTVISLLIDALKSGTIQTRSNAAAAIFTLSALDSNKEIIGKSGAIKYLLDLLDEGQPMAMKDAASAIFNLCLVHENKGRTVQEGAVRVILNKIVDHILVDELLAILALLSSHPKAVEEMGDLGAVPFLLGILRESTSERSKENCVAILYTICYSDRTKWKEIREEEKANGTLSKLAQCGTSRAKRKANGILDRLRRSPSLTHTA 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2362g00002 446 FunFam RING-type E3 ubiquitin transferase 63 137 - -
Gabi2362g00002 446 FunFam RING-type E3 ubiquitin transferase 147 441 - -
Gabi2362g00002 446 ProSiteProfiles U-box domain profile. 63 137 IPR003613 GO:0004842|GO:0016567
Gabi2362g00002 446 PANTHER U BOX DOMAIN-CONTAINING 23 437 - -
Gabi2362g00002 446 SMART arm_5 354 395 IPR000225 GO:0005515
Gabi2362g00002 446 SMART arm_5 274 314 IPR000225 GO:0005515
Gabi2362g00002 446 SMART arm_5 232 273 IPR000225 GO:0005515
Gabi2362g00002 446 SMART Ubox_2 67 130 IPR003613 GO:0004842|GO:0016567
Gabi2362g00002 446 Pfam U-box domain 65 134 IPR003613 GO:0004842|GO:0016567
Gabi2362g00002 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 137 IPR013083 -
Gabi2362g00002 446 SUPERFAMILY RING/U-box 59 141 - -
Gabi2362g00002 446 CDD RING-Ubox_PUB 65 117 IPR045210 -
Gabi2362g00002 446 Gene3D - 155 443 IPR011989 -
Gabi2362g00002 446 SUPERFAMILY ARM repeat 156 439 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2362g00002 Gabi-Chr2362 17541 19731 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2362g00002 126 446 U-box Gene Family AT3G07360 60.909 4.56e-131 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2362g00002 - - gmx:100806619 676.396