Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2359g00033 ATGTCGTCTGAACCGTTGATTCAACCGTCGGAAGCATTGTCGGGATCTCAGTCGTCACGGCAATGGATTTTCGAAGAGTTGCCGAAGGCCACCATCATATCGGTGTCGCGACCAGAGACCGGAGATATTAGCCCAATCCTCCTTTCTTATACCATTGAGTTGCAGTACAAACAGTTCAAGTGGCGTCTACTGAAGAAAGCATCACAAGTTCTCTATTTACAGTTCGCTTTGCGGAAACGTGCATTAATTGAAGACCTTTACGAGGTAAAAGAATGGCTTCAAAGCTTAGGAATAGCAGATCAAACTGTGATGGTGCAAGATGACGAAGAACCTGATGATGGAGCTGTACCTTTACATCAGGAAGACAGTGTTAAAAGCAGATATGTTCCATCCATAGCTGCTCTCTCAATAATTCGTCCATCACTAGGAGGTCAGCAGTCAGTTGCGGATAGAGCCAAAGTCTCAATGCAGGGTTATCTGAATCATTTTTTAGGAAACCTGGATATTGTGAATTCTCAAGAGGTCTGCAGGTTTTTGGAGGTCTCCAAGCTATCTTTTTTACAGGAGTATGGTCCAAAACTGAAAGAGGGATATGTAACAGTGAAGCATTTGTCAAATATTTCGCAGGATTCAGATGTAACATGCCTTCCATGTGATTGGTTTCGTTGGTGCGATAACAAGTGGGAGAAGGTATGGGCTGTTTTGAAACCTGGGTTTTTGGCATTGCTGGATGATCCTTTCAACAACAAACCACTGGATATAATTGTTTTTGATGTCCTCCCATCCTCAAATGGAGATGAAGGGATCAAACTACATTTAGCTGATCCTATAAAGGAACGCAATCCTTTGTGTTACACATTTAAGGTTACTACTGGTAGTAGGAGCATATGGTTGAGAACTACCAGTAGTGCTAAAGTTAAATCCTGGGTTACTGCAATTAATGAAACTGGTCTAAGACCTATGGAGGGTTGGTGTTGTCCTCATCGCTTTGGTTCATTTGCTCCCGAAAGAGGTTTGACAGAAGATGGGAGCCAAGCCCAATGGTTTGTAGATGGACAGGCAGCATTTGAAGCAATTGCTTCTTCAATTCAAGATGCAAAATCAGAGATCTTTATTACAGGATGGTGGCTTTGCCCAGAGCTATATCTGAAACGGCCTTTTGATAGTTTTCCTACCTTTAGGTTAGAGTCATTACTAGAAGAAAAGGCTAAGCAAGGGGTTCAGATCTATGTGCTTCTTTACAAGGAGGTTTCTCTAGCTTTGAAAATCAACAGCTTGTACAGTATGAGAAGATTGCTCAAAATTCATGAGAATGTGAGGGTATTGCGCTATCCTGACCATTTCGCCAGTCGTGTGTATTATTGGTCGCACCATGAAAAACTTGTAATTGTTGATTACAAGATTTGCTATATTGGAGGATTAGATTTATGCTTTGGTCGATATGACACACCTGAACATAAAGTGGGTGATTGCCCCTCTGTCATATGGCCTGGAAAGGACTATTACAACCCAAGAGAATCTGAACCAAATTCATGGGAAGACACCATGAGAGATGAATTGGATCGCAAGAAACATCCCCGTATGCCATGGCATGATGTCCAATGTGCTCTTTGGGGACCTCCCTGTCGCGACATTGCTCGGCACTTTGTTCAACGTTGGAACCATGCTAAGAGAACTAAAGCTCCAAATGAACTTGCGATTCCACTACTTATGCCTCACCATCACATGGTCATCCCTCATTACTTGGGAAGAAGGAAAGAGATAGACATTGATGGAAAGAAAGATGAAGACAAGAACAAAGAAATTGACATGCAGGATTCATTTTCCTCACAGTCTCCAATGCAAGATATACCACTACTTTTACCTCAAGAAGCTGTTGGATTAGTTACTTCAAAAGGAGATGATACAAATTTTAGTGGAAGTTCTCCACTATTGTCCCAAAAGCTGGAACATGAAACTTTAGTTTCAGACACCCAGATGAAAGGATTTGAAGATGAAGTTGTTCCTTTTGACTTGGGGGCACAACCTGTTGTTGATGATCTAGAAGATTGGGGGGAAACACCAGAAGGTACCAATGAATATGGACAAGTTGGTCCATGTACTACTTGTCACTGTCAGGTGCTCAGAAGTGTCGACCACTGGTCTGCTGGAACAGGTCAGACTGAAAAAAGCATCCACACTGCATATTGTTCTCTTATTGAAAAAGCAGAGCATTTTATCTACATTGAGAATCAATTTTTTATATCAGGTCTAGAAGGGGATGACGTAATACAGAACCGTATTTTGGAAGCACTATACAGGCGTATTTTGCTAGCCCACAAAGAACAGAAAAATTTTAGAGTTATAATTGTAATGCCCCTCTTGCCTGGCTTCCAGGGTGGTCTGGATGATGGTGGTGCTGCAACTGTGAGAGCCTTAACTCATTGGCAGTATAGAACAATTTCTAGAGAAAAGCACTCCATATTACAAAATCTTGAAGCTATACTTGGTCATAAAACACATGATTATATTTCTTTTTACGGTCTACGATCTCATGGTAGACTTCATGATGAAGGTCCTATGGCTACAAGTCAGGTATACGTGCACAGTAAATTGATGATAATTGATGACCGTGTAGCTCTTATTGGATCATCTAATATAAATGACCGGAGTTTGCTTGGATTTAGAGACTCTGAGATCGGAGTGCTTATAGAAGACAAAGAACATATTGAATCATTGATGAATGGAAAGCCATGGAATGCTGGGAAATTTTCCTATAGCCTCCGCTGCTCCCTATGGTCTGAGCACCTTGGTCTTCATACAGGAGAGATCAGTAAAATCAGAGATCCAGTGGCAAACACAACCTACAAGGATTTGTGGTCAGCAACTGCAAAGGAAAATACTAGGATATACCATGAGGTGTTCGCTTGCATTCCCAATGATCAGATACACTCCAGGTGTGGATTTATCCCATCTATCCTATCTAATTACAATGCATTAATATTATTATACTTTCCAACAATATGCAGAGCTGCACTTCGGCAAAGCATGGCACAGTGGAAGGAAAGACTTGGCCATACCACCATAGATTTGGGAATAGCCCCTAATAAAATATTCTGTCATGAGAATGGAGAAATCAAAGTAATAGACCCCATAGAAAGATTGAAGTCTGTAAAGGGACATCTTGTTTCTTTTCCTTTGGAGTTCATGCGTGAGGAAGATCTAAGACCAGTTGCTATTGAGAGTGAGTTTTATGTAGCTCCTCATGTATATCATTAA 3258 0.4119 MSSEPLIQPSEALSGSQSSRQWIFEELPKATIISVSRPETGDISPILLSYTIELQYKQFKWRLLKKASQVLYLQFALRKRALIEDLYEVKEWLQSLGIADQTVMVQDDEEPDDGAVPLHQEDSVKSRYVPSIAALSIIRPSLGGQQSVADRAKVSMQGYLNHFLGNLDIVNSQEVCRFLEVSKLSFLQEYGPKLKEGYVTVKHLSNISQDSDVTCLPCDWFRWCDNKWEKVWAVLKPGFLALLDDPFNNKPLDIIVFDVLPSSNGDEGIKLHLADPIKERNPLCYTFKVTTGSRSIWLRTTSSAKVKSWVTAINETGLRPMEGWCCPHRFGSFAPERGLTEDGSQAQWFVDGQAAFEAIASSIQDAKSEIFITGWWLCPELYLKRPFDSFPTFRLESLLEEKAKQGVQIYVLLYKEVSLALKINSLYSMRRLLKIHENVRVLRYPDHFASRVYYWSHHEKLVIVDYKICYIGGLDLCFGRYDTPEHKVGDCPSVIWPGKDYYNPRESEPNSWEDTMRDELDRKKHPRMPWHDVQCALWGPPCRDIARHFVQRWNHAKRTKAPNELAIPLLMPHHHMVIPHYLGRRKEIDIDGKKDEDKNKEIDMQDSFSSQSPMQDIPLLLPQEAVGLVTSKGDDTNFSGSSPLLSQKLEHETLVSDTQMKGFEDEVVPFDLGAQPVVDDLEDWGETPEGTNEYGQVGPCTTCHCQVLRSVDHWSAGTGQTEKSIHTAYCSLIEKAEHFIYIENQFFISGLEGDDVIQNRILEALYRRILLAHKEQKNFRVIIVMPLLPGFQGGLDDGGAATVRALTHWQYRTISREKHSILQNLEAILGHKTHDYISFYGLRSHGRLHDEGPMATSQVYVHSKLMIIDDRVALIGSSNINDRSLLGFRDSEIGVLIEDKEHIESLMNGKPWNAGKFSYSLRCSLWSEHLGLHTGEISKIRDPVANTTYKDLWSATAKENTRIYHEVFACIPNDQIHSRCGFIPSILSNYNALILLYFPTICRAALRQSMAQWKERLGHTTIDLGIAPNKIFCHENGEIKVIDPIERLKSVKGHLVSFPLEFMREEDLRPVAIESEFYVAPHVYH 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2359g00033 1085 SUPERFAMILY Phospholipase D/nuclease 316 573 - -
Gabi2359g00033 1085 PIRSF PLD_euk 20 1085 IPR016555 GO:0004630|GO:0006654|GO:0048017
Gabi2359g00033 1085 Gene3D - 193 316 IPR011993 -
Gabi2359g00033 1085 SMART PH_update 193 320 IPR001849 -
Gabi2359g00033 1085 CDD PH_PLD 170 316 - -
Gabi2359g00033 1085 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 857 884 IPR001736 GO:0003824
Gabi2359g00033 1085 Pfam PLD-like domain 730 904 IPR025202 -
Gabi2359g00033 1085 SUPERFAMILY PH domain-like 187 315 - -
Gabi2359g00033 1085 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 453 480 IPR001736 GO:0003824
Gabi2359g00033 1085 SMART pld_4 453 480 IPR001736 GO:0003824
Gabi2359g00033 1085 SMART pld_4 857 884 IPR001736 GO:0003824
Gabi2359g00033 1085 ProSiteProfiles PH domain profile. 192 318 IPR001849 -
Gabi2359g00033 1085 Gene3D Endonuclease Chain A 691 920 - -
Gabi2359g00033 1085 Gene3D Endonuclease Chain A 339 573 - -
Gabi2359g00033 1085 CDD PLDc_vPLD1_2_yPLD_like_1 346 491 - -
Gabi2359g00033 1085 PANTHER PHOSPHOLIPASE D 153 1069 IPR015679 -
Gabi2359g00033 1085 Pfam Phospholipase D Active site motif 455 480 IPR001736 GO:0003824
Gabi2359g00033 1085 CDD PLDc_vPLD1_2_yPLD_like_2 717 901 - -
Gabi2359g00033 1085 FunFam Phospholipase 691 911 - -
Gabi2359g00033 1085 SUPERFAMILY Phospholipase D/nuclease 695 906 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2359g00033 Gabi-Chr2359 214225 225697 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2359g00033 23 1085 Phospholipase D Gene Family (Wang group) AT3G05630 64.067 0.0 1358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2359g00033 K01115 - gmx:100796914 1865.89