Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2359g00032 ATGTCGTCTGAACCGTTGATTCAACCGTCGGAAGCATTGTCGGGATCTCAGTCGTCACGGCAATGGATTTTCGAAGAGTTGCCGAAGGCCACCATCATATCGGTGTCGCGACCAGAGACCGGAGATATTAGCCCAATCCTCCTTTCTTATACCATTGAGTTGCAGTACAAACAGTTCAAGTGGCGTCTACTGAAGAAAGCATCACAAGTTCTCTATTTACAGTTCGCTTTGCGGAAACGTGCATTAATTGAAGACCTTTACGAGGTAAAAGAATGGCTTCAAAGCTTAGGAATAGCAGATCAAACTGTGATGGTGCAAGATGACGAAGAACCTGATGATGGAGCTGTACCTTTACATCAGGAAGACAGTGTTAAAAGCAGATATGTTCCATCCATAGCTGCTCTCTCAATAATTCGTCCATCACTAGGAGGTCAGCAGTCAGTTGCGGATAGAGCCAAAGTCTCAATGCAGGGTTATCTGAATCATTTTTTAGGAAACCTGGATATTGTGAATTCTCAAGAGGTCTGCAGGTTTTTGGAGGTCTCCAAGCTATCTTTTTTACAGGAGTATGGTCCAAAACTGAAAGAGGGATATGTAACAGTGAAGCATTTGTCAAATATTTCGCAGGATTCAGATGTAACATGCCTTCCATGTGATTGGTTTCGTTGGTGCGATAACAAGTGGGAGAAGGTATGGGCTGTTTTGAAACCTGGGTTTTTGGCATTGCTGGATGATCCTTTCAACAACAAACCACTGGATATAATTGTTTTTGATGTCCTCCCATCCTCAAATGGAGATGAAGGGATCAAACTACATTTAGCTGATCCTATAAAGGAACGCAATCCTTTGTGTTACACATTTAAGGTTACTACTGGTAGTAGGAGCATATGGTTGAGAACTACCAGTAGTGCTAAAGTTAAATCCTGGGTTACTGCAATTAATGAAACTGGTCTAAGACCTATGGAGGGTTGGTGTTGTCCTCATCGCTTTGGTTCATTTGCTCCCGAAAGAGGTTTGACAGAAGATGGGAGCCAAGCCCAATGGTTTGTAGATGGACAGGCAGCATTTGAAGCAATTGCTTCTTCAATTCAAGATGCAAAATCAGAGATCTTTATTACAGGATGGTGGCTTTGCCCAGAGCTATATCTGAAACGGCCTTTTGATAGTTTTCCTACCTTTAGGTTAGAGTCATTACTAGAAGAAAAGGCTAAGCAAGGGGTTCAGATCTATGTGCTTCTTTACAAGGAGGTTTCTCTAGCTTTGAAAATCAACAGCTTGTACAGTATGAGAAGATTGCTCAAAATTCATGAGAATGTGAGGGTATTGCGCTATCCTGACCATTTCGCCAGTCGTGTGTATTATTGGTCGCACCATGAAAAACTTGTAATTGTTGATTACAAGATTTGCTATATTGGAGGATTAGATTTATGCTTTGGTCGATATGACACACCTGAACATAAAGTGGGTGATTGCCCCTCTGTCATATGGCCTGGAAAGGACTATTACAACCCAAGAGAATCTGAACCAAATTCATGGGAAGACACCATGAGAGATGAATTGGATCGCAAGAAACATCCCCGTATGCCATGGCATGATGTCCAATGTGCTCTTTGGGGACCTCCCTGTCGCGACATTGCTCGGCACTTTGTTCAACGTTGGAACCATGCTAAGAGAACTAAAGCTCCAAATGAACTTGCGATTCCACTACTTATGCCTCACCATCACATGGTCATCCCTCATTACTTGGGAAGAAGGAAAGAGATAGACATTGATGGAAAGAAAGATGAAGACAAGAACAAAGAAATTGACATGCAGGATTCATTTTCCTCACAGTCTCCAATGCAAGATATACCACTACTTTTACCTCAAGAAGCTGTTGGATTAGTTACTTCAAAAGGAGATGATACAAATTTTAGTGGAAGTTCTCCACTATTGTCCCAAAAGCTGGAACATGAAACTTTAGTTTCAGACACCCAGATGAAAGGATTTGAAGATGAAGTTGTTCCTTTTGACTTGGGGGCACAACCTGTTGTTGATGATCTAGAAGATTGGGGGGAAACACCAGAAGGTACCAATGAATATGGACAAGTTGGTCCATGTACTACTTGTCACTGTCAGGTGCTCAGAAGTGTCGACCACTGGTCTGCTGGAACAGGTCAGACTGAAAAAAGCATCCACACTGCATATTGTTCTCTTATTGAAAAAGCAGAGCATTTTATCTACATTGAGAATCAATTTTTTATATCAGGTCTAGAAGGGGATGACGTAATACAGAACCGTATTTTGGAAGCACTATACAGGCGTATTTTGCTAGCCCACAAAGAACAGAAAAATTTTAGAGTTATAATTGTAATGCCCCTCTTGCCTGGCTTCCAGGGTGGTCTGGATGATGGTGGTGCTGCAACTGTGAGAGCCTTAACTCATTGGCAGTATAGAACAATTTCTAGAGAAAAGCACTCCATATTACAAAATCTTGAAGCTATACTTGGTCATAAAACACATGATTATATTTCTTTTTACGGTCTACGATCTCATGGTAGACTTCATGATGAAGGTCCTATGGCTACAAGTCAGGTATACGTGCACAGTAAATTGATGATAATTGATGACCGTGTAGCTCTTATTGGATCATCTAATATAAATGACCGGAGTTTGCTTGGATTTAGAGACTCTGAGATCGGAGTGCTTATAGAAGACAAAGAACATATTGAATCATTGATGAATGGAAAGCCATGGAATGCTGGGAAATTTTCCTATAGCCTCCGCTGCTCCCTATGGTCTGAGCACCTTGGTCTTCATACAGGAGAGATCAGTAAAATCAGAGATCCAGTGGCAAACACAACCTACAAGGATTTGTGGTCAGCAACTGCAAAGGAAAATACTAGGATATACCATGAGGTGTTCGCTTGCATTCCCAATGATCAGATACACTCCAGGTGTGGATTTATCCCAGTTTTCTTCTATTGTGTTTTCTTCTCTCTTTTTACTTTTAGTTACTTTCCAACAATATGCAGAGCTGCACTTCGGCAAAGCATGGCACAGTGGAAGGAAAGACTTGGCCATACCACCATAGATTTGGGAATAGCCCCTAATAAAATATTCTGTCATGAGAATGGAGAAATCAAAGTAATAGACCCCATAGAAAGATTGAAGTCTGTAAAGGGACATCTTGTTTCTTTTCCTTTGGAGTTCATGCGTGAGGAAGATCTAAGACCAGTTGCTATTGAGAGTGAGTTTTATGTAGCTCCTCATGTATATCATTAA 3264 0.4124 MSSEPLIQPSEALSGSQSSRQWIFEELPKATIISVSRPETGDISPILLSYTIELQYKQFKWRLLKKASQVLYLQFALRKRALIEDLYEVKEWLQSLGIADQTVMVQDDEEPDDGAVPLHQEDSVKSRYVPSIAALSIIRPSLGGQQSVADRAKVSMQGYLNHFLGNLDIVNSQEVCRFLEVSKLSFLQEYGPKLKEGYVTVKHLSNISQDSDVTCLPCDWFRWCDNKWEKVWAVLKPGFLALLDDPFNNKPLDIIVFDVLPSSNGDEGIKLHLADPIKERNPLCYTFKVTTGSRSIWLRTTSSAKVKSWVTAINETGLRPMEGWCCPHRFGSFAPERGLTEDGSQAQWFVDGQAAFEAIASSIQDAKSEIFITGWWLCPELYLKRPFDSFPTFRLESLLEEKAKQGVQIYVLLYKEVSLALKINSLYSMRRLLKIHENVRVLRYPDHFASRVYYWSHHEKLVIVDYKICYIGGLDLCFGRYDTPEHKVGDCPSVIWPGKDYYNPRESEPNSWEDTMRDELDRKKHPRMPWHDVQCALWGPPCRDIARHFVQRWNHAKRTKAPNELAIPLLMPHHHMVIPHYLGRRKEIDIDGKKDEDKNKEIDMQDSFSSQSPMQDIPLLLPQEAVGLVTSKGDDTNFSGSSPLLSQKLEHETLVSDTQMKGFEDEVVPFDLGAQPVVDDLEDWGETPEGTNEYGQVGPCTTCHCQVLRSVDHWSAGTGQTEKSIHTAYCSLIEKAEHFIYIENQFFISGLEGDDVIQNRILEALYRRILLAHKEQKNFRVIIVMPLLPGFQGGLDDGGAATVRALTHWQYRTISREKHSILQNLEAILGHKTHDYISFYGLRSHGRLHDEGPMATSQVYVHSKLMIIDDRVALIGSSNINDRSLLGFRDSEIGVLIEDKEHIESLMNGKPWNAGKFSYSLRCSLWSEHLGLHTGEISKIRDPVANTTYKDLWSATAKENTRIYHEVFACIPNDQIHSRCGFIPVFFYCVFFSLFTFSYFPTICRAALRQSMAQWKERLGHTTIDLGIAPNKIFCHENGEIKVIDPIERLKSVKGHLVSFPLEFMREEDLRPVAIESEFYVAPHVYH 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2359g00032 1087 SUPERFAMILY Phospholipase D/nuclease 316 573 - -
Gabi2359g00032 1087 SMART PH_update 193 320 IPR001849 -
Gabi2359g00032 1087 CDD PH_PLD 170 316 - -
Gabi2359g00032 1087 PIRSF PLD_euk 27 1087 IPR016555 GO:0004630|GO:0006654|GO:0048017
Gabi2359g00032 1087 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 857 884 IPR001736 GO:0003824
Gabi2359g00032 1087 SUPERFAMILY PH domain-like 187 315 - -
Gabi2359g00032 1087 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 453 480 IPR001736 GO:0003824
Gabi2359g00032 1087 Pfam PLD-like domain 730 904 IPR025202 -
Gabi2359g00032 1087 SMART pld_4 453 480 IPR001736 GO:0003824
Gabi2359g00032 1087 SMART pld_4 857 884 IPR001736 GO:0003824
Gabi2359g00032 1087 Gene3D - 193 316 IPR011993 -
Gabi2359g00032 1087 PANTHER PHOSPHOLIPASE D 153 1071 IPR015679 -
Gabi2359g00032 1087 ProSiteProfiles PH domain profile. 192 318 IPR001849 -
Gabi2359g00032 1087 Gene3D Endonuclease Chain A 691 920 - -
Gabi2359g00032 1087 CDD PLDc_vPLD1_2_yPLD_like_1 346 491 - -
Gabi2359g00032 1087 Pfam Phospholipase D Active site motif 455 480 IPR001736 GO:0003824
Gabi2359g00032 1087 CDD PLDc_vPLD1_2_yPLD_like_2 717 901 - -
Gabi2359g00032 1087 Gene3D Endonuclease Chain A 339 573 - -
Gabi2359g00032 1087 FunFam Phospholipase 691 911 - -
Gabi2359g00032 1087 SUPERFAMILY Phospholipase D/nuclease 695 906 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2359g00032 Gabi-Chr2359 214225 225697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2359g00032 23 1087 Phospholipase D Gene Family (Wang group) AT3G05630 63.948 0.0 1356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2359g00032 K01115 - gmx:100796914 1865.12