Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2359g00019 ATGTCTGGGGGAGAAGGAAACAAGGGAAGGAGAATCGCCGTTATTGGCGTCTCTAGCTTGTTACTTGTGGCTATGGTGGTAGCCGTGGCAGTTCAAAATGGTTCGAACGATGACAGCAAGAAGAGCAGCCACGTGGCTTCCAATATGAAAGCAGTCAAAACCCTTTGCCATCCCGCTGAATACAAGGAAGAATGCGAGGAAACTCTTATTGAATATTCTGCTGGCAACACCACTGACCCAAAAGAACTCATTAAAATTGCCTTCAACGTAACCATTTCCAAAATTGGTGATAAACTCAAGGAAACAGATCTCTTGCATGAAGTTGAGAAGGATCCAAGAACCAAGTTGGCACTTGACACATGCAAGCAACTCATGGATCTTTCAATTGGGGAGTTAACGAGGTCACTTGAAGGATTAGGCGAATTTGATCTCATTAAAATGGACAAAATTCTAACCAATTTAAAGGTTTGGTTAAGTGGTGCAATTACATACCAAGATACTTGCTTGGATGGGTTCGAGAACACTACTAGCGAAGCTGGTTCAAAGATGAAGGAACTTCTAACCACAAGCATGCACATGAGCAGCAATGCCCTTTCCATCATCACCGAATTTGCCGATACTTTCTCCAATTTGAATGTCACCAAATTATTTGGTCGTCGCCAGCTCCTTCAGGATTCTGAGGTTCCCTCTTGGGTTGATCATCGTAGATTCCTTCATGCCGTTTCATTCAAACACAAGCCTAATGTCACCGTAGCCCTTGATGGAAGTGGGGATTTCAAGAGCATCAACGAGTCATTGCAAAAGGTCCCCGAAAATAACCGACAGCCATTCGTGATCTACATCAAGGAGGGTGTTTATCATGAGTACGTTGAAGTTACCAAGAAAATGGAACATGTTGTGTTTATCGGTGATGGTGGCAAAAAGACACGAATCACTGGCAACAAAAACTTCATCGATGGCATTAACACCTATAGAACCGCCACTGTTGCTATCCAAGGAGATTACTTTGTGGCCATCAATATGGGGTTTGAGAACAGCGCTGGTCCAGAAAAGCATCAAGCAGTGGCATTGAGGGTTCAAGGAGACAAGTCTATCTTCTACAATTGCTCAATGGATGGGTACCAAGACACACTTTATGTACACACCATGCGTCAGTTCTACAGGGATTGCACCATTTCAGGAACAATAGACTTCGTGTTTGGAAATGCTCTATCAGTATTCCAAAACTGCACATTCGTGGTAAGAAAGCCAATGAAGAACCAACAATGCATAGTGACTGCACAAGGGAGGAAGGAACTGCAACAACCATCAGGAATAGTGATCCAAGGTGGTTCCATTGTGTCAGACCCTGTGTTCTACCCAGTGAGGTTCGACCACAAGTCATTCCTAGCACGTCCATGGAAGAATTTCTCAAGGACAGTGATAATGGACACTTTCATTGATGATTTGATTCATTCTGATGGGTATTTGCCATGGCAAACAGAAGAGGGTGCTTCAGGAATGGACACTTGCTTTTATGCCGAATACCACAACACTGGCCCTGGTTCTGACAAATCAAAGCGTGTACATTGGGCTGGAATCTGGAACCTTAATTCTAAAGCTGCTCATTGGTTCTCACCAGCTAAGTTCTTTCATGGACATGATTGGATTGAGGTTACTGGAATCCCTTTCTTCGCTGGCATCCCAGAGCACCACAGACACAAGAAGACATTGCTTAATTGGTAA 1725 0.4383 MSGGEGNKGRRIAVIGVSSLLLVAMVVAVAVQNGSNDDSKKSSHVASNMKAVKTLCHPAEYKEECEETLIEYSAGNTTDPKELIKIAFNVTISKIGDKLKETDLLHEVEKDPRTKLALDTCKQLMDLSIGELTRSLEGLGEFDLIKMDKILTNLKVWLSGAITYQDTCLDGFENTTSEAGSKMKELLTTSMHMSSNALSIITEFADTFSNLNVTKLFGRRQLLQDSEVPSWVDHRRFLHAVSFKHKPNVTVALDGSGDFKSINESLQKVPENNRQPFVIYIKEGVYHEYVEVTKKMEHVVFIGDGGKKTRITGNKNFIDGINTYRTATVAIQGDYFVAINMGFENSAGPEKHQAVALRVQGDKSIFYNCSMDGYQDTLYVHTMRQFYRDCTISGTIDFVFGNALSVFQNCTFVVRKPMKNQQCIVTAQGRKELQQPSGIVIQGGSIVSDPVFYPVRFDHKSFLARPWKNFSRTVIMDTFIDDLIHSDGYLPWQTEEGASGMDTCFYAEYHNTGPGSDKSKRVHWAGIWNLNSKAAHWFSPAKFFHGHDWIEVTGIPFFAGIPEHHRHKKTLLNW 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2359g00019 574 NCBIfam pectinesterase inhibitor domain 26 203 IPR006501 GO:0004857
Gabi2359g00019 574 SUPERFAMILY Pectin lyase-like 246 560 IPR011050 -
Gabi2359g00019 574 FunFam Pectinesterase 242 561 - -
Gabi2359g00019 574 Gene3D Invertase/pectin methylesterase inhibitor family protein 48 204 IPR035513 -
Gabi2359g00019 574 Pfam Pectinesterase 248 546 IPR000070 GO:0030599|GO:0042545
Gabi2359g00019 574 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 204 IPR035513 -
Gabi2359g00019 574 CDD PMEI-like_3 54 205 - -
Gabi2359g00019 574 Gene3D - 246 562 IPR012334 -
Gabi2359g00019 574 FunFam Pectinesterase 48 205 - -
Gabi2359g00019 574 Pfam Plant invertase/pectin methylesterase inhibitor 51 200 IPR006501 GO:0004857
Gabi2359g00019 574 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Gabi2359g00019 574 PANTHER PECTINESTERASE 19 551 - -
Gabi2359g00019 574 SMART PMEI_2 47 200 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2359g00019 Gabi-Chr2359 154117 156258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2359g00019 5 561 Carbohydrate Esterase AT3G05610 50.355 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2359g00019 K01051 - gmx:100820556 944.495