Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2359g00010 ATGAGTGGTCGGTCAAGTCGCACAATTTATGTTGGCAATCTTCCTGGTGATGTTCGTTTGAGAGAAGTAGAGGATCTTTTCTACAAGTATGGTCCAATCATAGACATTGATTTGAAGATCCCTCCAAGACCTCCAGGTTATGCTTTTGTTGAGTTTGAGGATGCTCGTGATGCTGAAGATGCAATTCACTATCGGGATGGTTACAATTTTGACGGCTTTCGATTACGAGTTGAACTTGCACATGGTGGACGGGGATATTCATCATCAGTAGACCGTTACAGTAGTTATAGTGGTAGCAGTGGTAACCGTGGAGTTTCCAGGCGTTCTGACTATCGTGTTCTGGTCACTGGATTACCTCCTTCTGCTTCATGGCAAGACCTGAAAGATCACATGCGTAGAGCTGGTGATGTGTGTTTTTCTCAAGTCTTCCGTGAGCGTGGTGGCGTGACTGGGATAGTGGATTATACCAATTGTGATGATATGAAATATGCAATCAGGAAACTCGATGACTCAGAATTCCGAAATGCCTTTTCTCGGGCATACATACGGGTGAGGGAATATGATCGGAGTTATTCTAGGAGTCCCAGTTGTGATTCAAGGAGGAGCTATTCTAGAAGCCCCAGCTGCAGTCCATATATGTCACGAAGTCGAAGCCAGAGCCGAAGTAATAGCTATAGTGGCAGGAGCAGAAGTTTGACTCCAAAAGCAAAATTCTCTCGGCGTTCATTATCTCCTTACAGACTTATCAGCATAATGCTTCATACGAGGAAAGGTGGAGGGGGGGCATTGGTAAAGTGGATCGTCGGCTTGGCCACTAATTATACAATGTTCATTAGGGTTGACTCTCTTGTTTTTTAG 858 0.4464 MSGRSSRTIYVGNLPGDVRLREVEDLFYKYGPIIDIDLKIPPRPPGYAFVEFEDARDAEDAIHYRDGYNFDGFRLRVELAHGGRGYSSSVDRYSSYSGSSGNRGVSRRSDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSQVFRERGGVTGIVDYTNCDDMKYAIRKLDDSEFRNAFSRAYIRVREYDRSYSRSPSCDSRRSYSRSPSCSPYMSRSRSQSRSNSYSGRSRSLTPKAKFSRRSLSPYRLISIMLHTRKGGGGALVKWIVGLATNYTMFIRVDSLVF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2359g00010 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Gabi2359g00010 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Gabi2359g00010 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Gabi2359g00010 285 SUPERFAMILY RNA-binding domain, RBD 5 178 IPR035979 GO:0003676
Gabi2359g00010 285 SMART rrm1_1 8 78 IPR000504 GO:0003723
Gabi2359g00010 285 SMART rrm1_1 112 181 IPR000504 GO:0003723
Gabi2359g00010 285 MobiDBLite consensus disorder prediction 196 238 - -
Gabi2359g00010 285 CDD RRM2_SF2_plant_like 111 186 - -
Gabi2359g00010 285 Gene3D - 2 111 IPR012677 -
Gabi2359g00010 285 FunFam serine/arginine-rich splicing factor SR34A-like 111 188 - -
Gabi2359g00010 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Gabi2359g00010 285 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 110 - -
Gabi2359g00010 285 MobiDBLite consensus disorder prediction 191 238 - -
Gabi2359g00010 285 Gene3D - 112 188 IPR012677 -
Gabi2359g00010 285 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 5 242 - -
Gabi2359g00010 285 CDD RRM1_SF2_plant_like 8 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2359g00010 Gabi-Chr2359 87953 98444 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2359g00010 8 213 Eukaryotic Initiation Factors Gene Family AT4G34110 24.057 6.41e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2359g00010 K12890 - gmx:100794282 349.747