Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2359g00007 ATGAGTGGTCGGTCAAGTCGCACAATTTATGTTGGCAATCTTCCTGGTGATGTTCGTTTGAGAGAAGTAGAGGATCTTTTCTACAAGTATGGTCCAATCATAGACATTGATTTGAAGATCCCTCCAAGACCTCCAGGTTATGCTTTTGTTGAGTTTGAGGATGCTCGTGATGCTGAAGATGCAATTCACTATCGGGATGGTTACAATTTTGACGGCTTTCGATTACGAGTTGAACTTGCACATGGTGGACGGGGATATTCATCATCAGTAGACCGTTACAGTAGTTATAGTGGTAGCAGTGGTAACCGTGGAGTTTCCAGGCGTTCTGACTATCGTGTTCTGGTCACTGGATTACCTCCTTCTGCTTCATGGCAAGACCTGAAAGATCACATGCGTAGAGCTGGTGATGTGTGTTTTTCTCAAGTCTTCCGTGAGCGTGGTGGCGTGACTGGGATAGTGGATTATACCAATTGTGATGATATGAAATATGCAATCAGGAAACTCGATGACTCAGAATTCCGAAATGCCTTTTCTCGGGCATACATACGGGTGAGGGAATATGATCGGAGTTATTCTAGGAGTCCCAGTTGTGATTCAAGGAGGAGCTATTCTAGAAGCCCCAGCTGCAGTCCATATATGTCACGAAGTCGAAGCCAGAGCCGAAGTAATAGCTATAGTGGCAGGAGCAGAAGGTTCACTTTGGTTGCATTAAAGTATGGTTTGTTTGACTCCAAAAGCAAAATTCTCTCGGCCTTGATCAAGCCTATGTGGCCTTTTGCGGCGACCTGGGAACTGCATGTTAGGATCTTGATGGCATGTGGTGCTCAAACGCCTGCAACTTTGTGGTCTGAGGTCCCGGTCAAGATCCAGATCTCCATATTCATCTCCTCGACCTCGACGGAGTTGCAGTCCTAG 915 0.4612 MSGRSSRTIYVGNLPGDVRLREVEDLFYKYGPIIDIDLKIPPRPPGYAFVEFEDARDAEDAIHYRDGYNFDGFRLRVELAHGGRGYSSSVDRYSSYSGSSGNRGVSRRSDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSQVFRERGGVTGIVDYTNCDDMKYAIRKLDDSEFRNAFSRAYIRVREYDRSYSRSPSCDSRRSYSRSPSCSPYMSRSRSQSRSNSYSGRSRRFTLVALKYGLFDSKSKILSALIKPMWPFAATWELHVRILMACGAQTPATLWSEVPVKIQISIFISSTSTELQS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2359g00007 304 Gene3D - 2 110 IPR012677 -
Gabi2359g00007 304 Gene3D - 111 188 IPR012677 -
Gabi2359g00007 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Gabi2359g00007 304 SMART rrm1_1 8 78 IPR000504 GO:0003723
Gabi2359g00007 304 SMART rrm1_1 112 181 IPR000504 GO:0003723
Gabi2359g00007 304 MobiDBLite consensus disorder prediction 191 225 - -
Gabi2359g00007 304 CDD RRM2_SF2_plant_like 111 186 - -
Gabi2359g00007 304 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 110 - -
Gabi2359g00007 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Gabi2359g00007 304 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 5 226 - -
Gabi2359g00007 304 FunFam serine/arginine-rich splicing factor SR34A-like 111 188 - -
Gabi2359g00007 304 CDD RRM1_SF2_plant_like 8 79 - -
Gabi2359g00007 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Gabi2359g00007 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Gabi2359g00007 304 SUPERFAMILY RNA-binding domain, RBD 5 178 IPR035979 GO:0003676
Gabi2359g00007 304 MobiDBLite consensus disorder prediction 196 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2359g00007 Gabi-Chr2359 86672 98444 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2359g00007 8 80 Eukaryotic Initiation Factors Gene Family AT3G11400 32.895 9.27e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2359g00007 K12890 - gmx:100794282 335.495