Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2358g00027 ATGGATATAATTTCAAATTGTTATCGCTATTGTCAGATTCTACTTGCTTTTGCAATTTTCTTACAGATATTTTCTCAGCTTGAAGCCTCTCGCTCAAAGGTGGAACTGCTTCCTGGCTTTCAAGGACCTCTTCCCTTTGAACTCGAAACTGGGTATGTGGGATTAGGGGAAAGAGATGACGACATGCAAGTGTTCTACTACTTTATTAAGTCAGAGAACAACCCTGAGAAAGACCCTCTTATGCTTTGGCTAACTGGTGGCCCTGGCTGCTCTTCATTTTCTGGTCTTGCCTTTCAAATAGGTCCACTTGCATTTAAAACTGAGGAGTACAAAGGTAGCCTTCCTAATTTGGTCTTGAGACCACAGTCCTGGACAAAGGTATGTAGCATTATTTTTGTAGATTTGCCACTTGGAACTGGATTCTCTTATGCCAAAAATATCACTGCTCATCGAAGTGACTGGAAATCAGTTCACCATACACATCAATTTCTTAGGAAGTGGCTGATTGATCACTCGGAATTTCTTTCAAATAAATTCTACGTTGGAGCTGATTCATACTCTGGCATTCCTGCCCCCGCTATTGTTCAAGAAATTTCAAATGCAAATGAAAAAGGTCTCCGGCCATGGATAAATCTCCAGGGATATCTACTAGGGAACCCCATAACAACACTAAGAGAGAAAAATTATCAAATCCCATTTGCCCATGGAATGGGACTTATTTCTGATGAACTCTATGAGTCACTGCAGAGAAATTGTAAAGGAGAATATGAAGATATAGATTCCGAATTGTGTTTAATAGATTACCGCTCTTTTGAGGAGTGCCTTTCAGGAATTAATATGTTTAACATTTTGGATAGCTATTGCATAGATGATGATGCACTTAAGGATCATGAAGAAGCTCTGTGGAGGAGATCTCTGACTAAGAAGTTGAAGGCCTCTCTTAGTCCTCATCTCACTGTGCCAGAATTAAGCTGCCAAATTTATGGTTTTTTCCTTGCCACTCAATGGGCCAATGATGAAAGTGTTCGCAGGTCACTGCATATTCAAGAGGGAACTATAGGGAAATGGCAACGTTGTTACACTACTGATTTTGATCATGACATTTCTAGTAGCTTTGAGTTTCATGTAAATCTCAGTGCAAAAGGGTACCGCTCCTTGATATACAGTGGGGATCATGATGTAGTTGTTCCGTTCATTGCAACCCAAGCGTGGATAAGGGATCTAAACTACTCCATTGTGGATGATTGGAGGCCATGGCTTGTTAATGGCCAAGTTGCAGGATATACAAGGACTTACTCGAATCAAATGACATTTGCAACTGTGAAGGGTTCAGGACATACAGCTCCTGAGTACAAGCCTGATGAAGGTTTTGCCATGTTCACTAGATCTTGGACCAACAAGTAA 1404 0.4074 MDIISNCYRYCQILLAFAIFLQIFSQLEASRSKVELLPGFQGPLPFELETGYVGLGERDDDMQVFYYFIKSENNPEKDPLMLWLTGGPGCSSFSGLAFQIGPLAFKTEEYKGSLPNLVLRPQSWTKVCSIIFVDLPLGTGFSYAKNITAHRSDWKSVHHTHQFLRKWLIDHSEFLSNKFYVGADSYSGIPAPAIVQEISNANEKGLRPWINLQGYLLGNPITTLREKNYQIPFAHGMGLISDELYESLQRNCKGEYEDIDSELCLIDYRSFEECLSGINMFNILDSYCIDDDALKDHEEALWRRSLTKKLKASLSPHLTVPELSCQIYGFFLATQWANDESVRRSLHIQEGTIGKWQRCYTTDFDHDISSSFEFHVNLSAKGYRSLIYSGDHDVVVPFIATQAWIRDLNYSIVDDWRPWLVNGQVAGYTRTYSNQMTFATVKGSGHTAPEYKPDEGFAMFTRSWTNK 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2358g00027 467 SUPERFAMILY alpha/beta-Hydrolases 37 465 IPR029058 -
Gabi2358g00027 467 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 33 453 IPR001563 GO:0004185|GO:0006508
Gabi2358g00027 467 Pfam Serine carboxypeptidase 38 462 IPR001563 GO:0004185|GO:0006508
Gabi2358g00027 467 FunFam Carboxypeptidase 372 466 - -
Gabi2358g00027 467 Gene3D alpha/beta hydrolase 33 467 IPR029058 -
Gabi2358g00027 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 120 132 IPR001563 GO:0004185|GO:0006508
Gabi2358g00027 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 436 449 IPR001563 GO:0004185|GO:0006508
Gabi2358g00027 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 133 143 IPR001563 GO:0004185|GO:0006508
Gabi2358g00027 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 167 192 IPR001563 GO:0004185|GO:0006508
Gabi2358g00027 467 FunFam Serine carboxypeptidase-like 11 28 467 - -
Gabi2358g00027 467 FunFam Carboxypeptidase 324 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2358g00027 Gabi-Chr2358 276455 293404 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2358g00027 30 57 Calmodulin-binding Proteins AT2G22960 67.857 1.90e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2358g00027 K16296 - gmx:100780069 758.444