Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2358g00021 ATGGTTCGAGTGACTTCATTTTTTATGGGTTCCTTTCTTGTTTGGGCAATTTTGGTGCTTGATTTGGTGCGTAAGGCTTCTGGCAATGCGGAAGGTGATGCCCTGAATGCATTGAAGAGTAACTTGCTTGATCCTAACAATGTTCTTCAAAGCTGGGATGCAACCCTTGTCAATCCATGCACATGGTTTCACGTTACATGCAACAGTGATAATAGTGTGACCCGTGTTGATCTTGGAAATGCTGACCTTTCTGGTCAACTGGTTCCACAGCTTGGTCAGCTCTCAAATTTGCAGTACTTAGAACTTTATAGTAACAATATAAGTGGAAAAGTCCCTGATGAGCTTGGAAATTTAACCAACTTGGTGAGCTTGGATCTTTACTTGAACAGGTTAACTGGTTCCATTCCGAATACATTGGGCAAGCTTGGAAAACTACGTTTCCTGCGTCTCAATAATAACAGCTTGTCAGGAGGTATTCCCATGACTCTAACAACTGTTGCTACACTACAAGTTCTTGATCTCTCAAACAACCAGCTAAAAGGGGATATCCCAGTGAATGGCTCATTTTCATTATTTACCCCCATCAGTTATCAAAATAATCCTGACTTGATACAACCAAAAAACAATCCAGGAACACTTTCTCCACCGCCATCAGCTTCTTCAGGTAACAGTAATACTGGAGCTATTGCTGGAGGAGTTGCTGCTGGTGCTGCTCTGTTGTTTGCAGCCCCTGCAATTGCACTTGCTTATTGGCGAAGAAGGAAACCTCAGGATCATTTCTTTGATGTTCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAGCTTAAAAGGTTTTCTCTGCGTGAGCTGCAAGTTGCAACAGATAACTTTAGTAACAAACACATTCTGGGTAGAGGTGGATTTGGAAAAGTTTATAAAGGACGCTTAGCCGATGGCACTCTTGTAGCAGTAAAAAGACTTAAAGAGGAGCGTACACAGGGTGGGGAGCTGCAATTTCAAACAGAAGTGGAAATGATTAGCATGGCCGTGCATCGTAATTTGCTTCGGCTTAAAGGTTTTTGCATGACACCTACTGAACGTTTGCTTGTGTATCCTTTCATGGTTAACGGAAGTGTAGCATCTTGTTTACGAGAACGCCAAGAATCTGAAGCGCCGCTTGACTGGCCAATCCGGAGGCGCATTGCGCTAGGAGCTGCAAGGGGACTTGCTTATTTGCATGATCATTGTGACCCTAAAATTATTCATCGTGATGTCAAAGCTGCAAATATATTATTGGACGAGGAATTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAAACTTATGGATTACAAAGATACTCATGTTACTACTGCAGTACGTGGTACGATTGGGCATATAGCACCAGAGTACCTCTCAACAGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATACGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTTGATCTAGCACGACTTGCCAATGATGATGATGTGATGTTGCTTGATTGGGTTAAAGGACTTCTCAAAGACAAGAAGTTGGAAACATTGGTAGATGCAGATTTACACGGAAATTATGAAGATGAGGAGGTAGAGCAGTTAATCCAAGTGGCCTTACTATGCACGCAAGGCTCCCCTATGGAAAGACCCAAGATGTCTGAGGTGGTCAGAATGCTAGAAGGTGATGGTTTGGCTGAAAAATGGGAACAATGGCAGAAAGAGGAGATGTTCCGGCAAGATTTTAACCACAACATGCATCATCCTAATGCAAATTGGATAGTAGATTCAACTTCACATATCCAGCCAGATGAACTATCAGGTCCTAGATGA 1848 0.4275 MVRVTSFFMGSFLVWAILVLDLVRKASGNAEGDALNALKSNLLDPNNVLQSWDATLVNPCTWFHVTCNSDNSVTRVDLGNADLSGQLVPQLGQLSNLQYLELYSNNISGKVPDELGNLTNLVSLDLYLNRLTGSIPNTLGKLGKLRFLRLNNNSLSGGIPMTLTTVATLQVLDLSNNQLKGDIPVNGSFSLFTPISYQNNPDLIQPKNNPGTLSPPPSASSGNSNTGAIAGGVAAGAALLFAAPAIALAYWRRRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKHILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLKGFCMTPTERLLVYPFMVNGSVASCLRERQESEAPLDWPIRRRIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDADLHGNYEDEEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKEEMFRQDFNHNMHHPNANWIVDSTSHIQPDELSGPR 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2358g00021 615 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 576 - -
Gabi2358g00021 615 ProSiteProfiles Protein kinase domain profile. 291 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2358g00021 615 SMART serkin_6 291 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2358g00021 615 MobiDBLite consensus disorder prediction 200 225 - -
Gabi2358g00021 615 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Gabi2358g00021 615 SUPERFAMILY Protein kinase-like (PK-like) 270 566 IPR011009 -
Gabi2358g00021 615 FunFam Somatic embryogenesis receptor-like kinase 1 368 585 - -
Gabi2358g00021 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Gabi2358g00021 615 Gene3D Transferase(Phosphotransferase) domain 1 368 585 - -
Gabi2358g00021 615 Gene3D Ribonuclease Inhibitor 28 210 IPR032675 -
Gabi2358g00021 615 Gene3D Phosphorylase Kinase; domain 1 260 367 - -
Gabi2358g00021 615 SUPERFAMILY L domain-like 31 195 - -
Gabi2358g00021 615 ProSitePatterns Protein kinases ATP-binding region signature. 297 319 IPR017441 GO:0005524
Gabi2358g00021 615 FunFam Somatic embryogenesis receptor kinase 1 260 367 - -
Gabi2358g00021 615 Pfam Protein kinase domain 292 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2358g00021 615 FunFam Somatic embryogenesis receptor kinase 1 27 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2358g00021 Gabi-Chr2358 201237 209666 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2358g00021 8 615 Receptor kinase-like Gene Family AT4G33430 78.116 0.0 979
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gabi2358g00021 Pkinase 1.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2358g00021 K13416 - gmx:100800522 1065.06