Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2358g00006 ATGGAGTTTCCCATTTTTGTTCGTAAACATGTTACTTTTTCAGTCCTTGCTATTCTTGGCACTCTTGCTATAGCTCAAGGAGGTCCTATAGATGGTAATCCTGCAGAAAAAGATGCCCTTTTTGGTCTCAAGGCCACTTTCAACGACCCTTTTCTAAATGGGAATTGGACTGGCCTTCACTGCAATGTCAATGGTCCTTCAAGGTGGTTTGGTATTCTGTGTGCCTATGGTCGTGTCAAGGGTATAGTTTTGGAAGGTATGGGGCTGCCGGGAGATGTCAATGTCAATGCTTTCTCTGAACTTGAAGAGTTGTCCATCCTGAGCTTCAAGAACAATTCATTACGGGGAAAAATGATGAATTTCTCCAACAATCATCAAATGAAGTACATTGATTTGTCAGGAAATGTTTTAGTTGGGTCAATATCAAAATCCCTTGTGAGTCTTATCCTCTTGGAGAAGTTGTTTCTGCATGATAATAGGCTCACAGGTTCAATACCAGAGTTTAGTCAATCAAGTTTGGAGATATTTAATGTCTCAAACAATAACCTTGAGGGGCCAATCCCAACAACTCAAACTCTCCAATCATTTGACTCTGCTTCATTCTCAGGAAATCCAAGATTGTGTGGTTCACCTTCTCTTAATTCCTGCAAAACTAGCTCCAATTCTCCTAGTGTACTACCCTTAAATAGCACCCTCGACAACAATGAAGGCCAAAATAAACCTTCAGAAAAAAATAACAATTCCAACATTTTAATAATTTTCAATGTGGTTTTTCTGCTTGCAATTATATTGCTATTGATGCTTTACTTTAACAAAGCCAGAAAGCTCAGTAAAATAGAGAAGGGTCAGATTCCCACAGTGGAAGAAGAAGAGAAAGATGTGGAGAACAGTGTTAGCAAGAAGATAGAGATAGGAGAGGGGACAATGATGAGAGTAGAAGAGAGAAGGCAACTCATATTCTTTAGTAATAAGCCAAAATTTCAAATGGGTGAACTTCTCAGAGCTTCTGCTGAGGCACTGGGTCAAGGAATCATGGGGAATAGTTATAAAGCTATGCTGAATGATGGAACTCCCATTGTTGTAAAGAGGCTAAGGGACTTGAAACCACTCACTAAGGAGGAATTTTCAAAGATATTGCATATGATTGCTGATCTGAAGCACCCAAATTTGTTGCCCTTGCTTGCTTACTACCATTCCAAAGATGAGAAGCTGATGCTCTATAGATATGCACAGAATGGAAATCTTTTCTCCAGACTTCATGATGGTAGAGATGGAAACCGGGTTCCATTCAGTTGGAACTCAAGATTATCAGTTGCAAGAGGAGTGGCTCGAGCATTGGAGTACCTACACCTCAACAACAGGTTCTATAACATTATCCCACATGGCAACTTGAGGCCTTCAAATGTACTCTTTGATGAAAACGATGCGGTTCTTGTTTCTGACTTTGGCCTTGCCTTCTTAGTAGCACAACCAGTTGCAGCTCAGCATATGGTTGTTTACAAATCACCTGAATATGTATTTGCAAAAAAAGTTACAATGCAATCCGATGTTTGGAGCTATGGATCCCTTCTAATAGAACTTCTAACTGGCAAAGTATCTTCATGTTCAGCTCCACCAGGGATCAATGGTGTGGATATTTGTAGTTGGGTTCACAGAGCAGTGAGAGAAGAATGGACTGCTGAAATCTTTGACAAAGAAATTTCTGGTCAAAAGAGTGCTCTTCCTGGGATGCTAAGGTTGCTGCAGATTGCAATGCGTTGCATTGAGAGGTTCCCAGAGAAACGTCCTGAGATGAGAGATGTGGTTAGAGAAGTGGAAAAAATACACGCCCCTTTGACCAATGAAGATGAGGATGATGTATCTGCAGATAGGTCTCTAACAGATGATTCATTTTCAACCAGTACCTCAGGGATTATTGGAGATGAAAGATAG 1932 0.4048 MEFPIFVRKHVTFSVLAILGTLAIAQGGPIDGNPAEKDALFGLKATFNDPFLNGNWTGLHCNVNGPSRWFGILCAYGRVKGIVLEGMGLPGDVNVNAFSELEELSILSFKNNSLRGKMMNFSNNHQMKYIDLSGNVLVGSISKSLVSLILLEKLFLHDNRLTGSIPEFSQSSLEIFNVSNNNLEGPIPTTQTLQSFDSASFSGNPRLCGSPSLNSCKTSSNSPSVLPLNSTLDNNEGQNKPSEKNNNSNILIIFNVVFLLAIILLLMLYFNKARKLSKIEKGQIPTVEEEEKDVENSVSKKIEIGEGTMMRVEERRQLIFFSNKPKFQMGELLRASAEALGQGIMGNSYKAMLNDGTPIVVKRLRDLKPLTKEEFSKILHMIADLKHPNLLPLLAYYHSKDEKLMLYRYAQNGNLFSRLHDGRDGNRVPFSWNSRLSVARGVARALEYLHLNNRFYNIIPHGNLRPSNVLFDENDAVLVSDFGLAFLVAQPVAAQHMVVYKSPEYVFAKKVTMQSDVWSYGSLLIELLTGKVSSCSAPPGINGVDICSWVHRAVREEWTAEIFDKEISGQKSALPGMLRLLQIAMRCIERFPEKRPEMRDVVREVEKIHAPLTNEDEDDVSADRSLTDDSFSTSTSGIIGDER 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2358g00006 643 SMART serkin_6 334 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2358g00006 643 SUPERFAMILY L domain-like 38 211 - -
Gabi2358g00006 643 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 23 609 IPR046959 -
Gabi2358g00006 643 MobiDBLite consensus disorder prediction 212 244 - -
Gabi2358g00006 643 Pfam Protein tyrosine and serine/threonine kinase 338 604 IPR001245 GO:0004672|GO:0006468
Gabi2358g00006 643 Gene3D Ribonuclease Inhibitor 33 218 IPR032675 -
Gabi2358g00006 643 Gene3D Transferase(Phosphotransferase) domain 1 410 631 - -
Gabi2358g00006 643 SUPERFAMILY Protein kinase-like (PK-like) 338 609 IPR011009 -
Gabi2358g00006 643 MobiDBLite consensus disorder prediction 608 643 - -
Gabi2358g00006 643 ProSiteProfiles Protein kinase domain profile. 334 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2358g00006 643 Gene3D Phosphorylase Kinase; domain 1 303 409 - -
Gabi2358g00006 643 MobiDBLite consensus disorder prediction 626 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2358g00006 Gabi-Chr2358 53277 55799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2358g00006 52 629 Receptor kinase-like Gene Family AT5G58300 35.784 1.54e-99 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi2358g00006 PK_Tyr_Ser-Thr 1.3e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2358g00006 - - pcin:129284917 753.436