Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2357g00018 ATGGAGGGTCAGGCTCCGATAATCAACGACTCAACATTCTCTTCTGCTAACCCTTCTTCTTATTCCTTATCCGAGATTTGGCCTATGCCTATTCCTCATTTCCCTTCCTTCCCCGACCACACTCCAAATCGCAGGAAGAGGAGGAAGGATGATTCTCCCAATCACTCCGATGAAAACGGTGCTTTGGAAGCTGAAGCGGATGCAACTTCAGTAGCCGGTAACAAGTTACCTGAACAAACTGCTAAACCTTTTTCTGAGCCACCTAAGCAAGATTACATACATGTTAGAGCAAGAAGAGGCCAAGCTACCGATAGCCACAGTCTTGCAGAGAGAGCAAGAAGAGAAAAAATCAGTGAGAGAATGAAAATTCTTCAAGATTTAGTACCCGGATGTAACAGGGTAATTGGTAAAGCACTTGTCTTGGATGAGATAATCAATTACGTTCAGTCACTGCAGCGTCAGGTTGAGTTCCTTTCGATGAAGCTTGAAGCAGTTAATTCGAGATTGAACATGAACCCTGCTATTGAATGTTTTCCTTCAAAAGATGTTGGTACTCAGCCATTCGACCTAGCTGGAATGATATTTGGATCACAAGCAGCCAGAGGGTATGCTCAGGGATCACAACCTGGATGGCTGCATATGCAGATAGCTGGTGGTTTCGAGAAAGCAACATAA 675 0.443 MEGQAPIINDSTFSSANPSSYSLSEIWPMPIPHFPSFPDHTPNRRKRRKDDSPNHSDENGALEAEADATSVAGNKLPEQTAKPFSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNRVIGKALVLDEIINYVQSLQRQVEFLSMKLEAVNSRLNMNPAIECFPSKDVGTQPFDLAGMIFGSQAARGYAQGSQPGWLHMQIAGGFEKAT 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2357g00018 224 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 99 171 IPR036638 GO:0046983
Gabi2357g00018 224 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 44 194 IPR024097 GO:0006355
Gabi2357g00018 224 Gene3D - 98 175 IPR036638 GO:0046983
Gabi2357g00018 224 CDD bHLH_AtBPE_like 91 173 - -
Gabi2357g00018 224 MobiDBLite consensus disorder prediction 39 62 - -
Gabi2357g00018 224 Pfam Helix-loop-helix DNA-binding domain 105 152 IPR011598 GO:0046983
Gabi2357g00018 224 Coils Coil 148 168 - -
Gabi2357g00018 224 FunFam Basic helix-loop-helix transcription factor 98 170 - -
Gabi2357g00018 224 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 101 151 IPR011598 GO:0046983
Gabi2357g00018 224 SMART finulus 107 157 IPR011598 GO:0046983
Gabi2357g00018 224 MobiDBLite consensus disorder prediction 1 24 - -
Gabi2357g00018 224 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2357g00018 Gabi-Chr2357 320467 323342 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2357g00018 6 31 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 73.077 2.55e-08 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2357g00018 HLH 3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2357g00018 - - gmx:100799646 340.117