Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2357g00017 ATGGAGGGTCAGGCTCCGATAATCAACGACTCAACATTCTCTTCTGCTAACCCTTCTTCTTATTCCTTATCCGAGATTTGGCCTATGCCTATTCCTCATTTCCCTTCCTTCCCCGACCACACTCCAAATCGCAGGAAGAGGAGGAAGGATGATTCTCCCAATCACTCCGATGAAAACGGTGCTTTGGAAGCTGAAGCGGATGCAACTTCAGTAGCCGGTAACAAGTTACCTGAACAAACTGCTAAACCTTTTTCTGAGCCACCTAAGCAAGATTACATACATGTTAGAGCAAGAAGAGGCCAAGCTACCGATAGCCACAGTCTTGCAGAGAGATTTTTGCAGGCAAGAAGAGAAAAAATCAGTGAGAGAATGAAAATTCTTCAAGATTTAGTACCCGGATGTAACAGGGTAATTGGTAAAGCACTTGTCTTGGATGAGATAATCAATTACGTTCAGTCACTGCAGCGTCAGGTTGAGTTCCTTTCGATGAAGCTTGAAGCAGTTAATTCGAGATTGAACATGAACCCTGCTATTGAATGTTTTCCTTCAAAAGATGTTGGTACTCAGCCATTCGACCTAGCTGGAATGATATTTGGATCACAAGCAGCCAGAGGGTATGCTCAGGGATCACAACCTGGATGGCTGCATATGCAGATAGCTGGTGGTTTCGAGAAAGCAACATAA 684 0.4415 MEGQAPIINDSTFSSANPSSYSLSEIWPMPIPHFPSFPDHTPNRRKRRKDDSPNHSDENGALEAEADATSVAGNKLPEQTAKPFSEPPKQDYIHVRARRGQATDSHSLAERFLQARREKISERMKILQDLVPGCNRVIGKALVLDEIINYVQSLQRQVEFLSMKLEAVNSRLNMNPAIECFPSKDVGTQPFDLAGMIFGSQAARGYAQGSQPGWLHMQIAGGFEKAT 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2357g00017 227 SMART finulus 107 160 IPR011598 GO:0046983
Gabi2357g00017 227 Coils Coil 151 171 - -
Gabi2357g00017 227 CDD bHLH_AtBPE_like 91 176 - -
Gabi2357g00017 227 FunFam Basic helix-loop-helix transcription factor 98 173 - -
Gabi2357g00017 227 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 44 197 IPR024097 GO:0006355
Gabi2357g00017 227 MobiDBLite consensus disorder prediction 1 70 - -
Gabi2357g00017 227 MobiDBLite consensus disorder prediction 39 62 - -
Gabi2357g00017 227 Gene3D - 98 178 IPR036638 GO:0046983
Gabi2357g00017 227 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 99 174 IPR036638 GO:0046983
Gabi2357g00017 227 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 104 154 IPR011598 GO:0046983
Gabi2357g00017 227 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2357g00017 Gabi-Chr2357 320467 323342 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2357g00017 6 31 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 73.077 2.76e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2357g00017 - - gmx:100799646 334.724