Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2357g00003 ATGGATGAGGATCAAGAGATGGAGAGATTTGGAACGGAGAATGATTTCGAAGGCGCGCAATGGATTGGTGGCGAGTTTTACTATAAAAAGCGCAAAGAAAAACGAACTCAAACCAAAGATGATGTTCTTTATGGAGTTTTCGCAGATTCCGATGACGACGATGATTATTCTAGCAGAAAGCGACGGAAGGATCGTGATTTATCGAAGAAGCCGGATCTCACCAAGCCTGTGAATTTTGTCTCTACAGGCACTTTTATGCCTAATGAGGATGTTGTTGATAAGAATTCTTCTAAGGAACAGGATGAGAAGGAGGAGAGTCATGGTGGTGAAGATAGGCCCGGTTTAGGTCTTGGTATGGGGTTTGCTAGCACTTCCGGGTCCGGTTTGGGGTTTAATAATTCGAGTTATGGTGCGAATGGAACGGAGAGAATTGATGACTCGGATGAGAATGGTGAGAATAGCTTTCTGCCTACGGCGTTTGGGAAGAAGATTAAGGAGGGGGCGATGAGAAGGGAGAGGGAGAAGGAGAGGGAAAGATTGGAGAAGAAGAGAGGGCAGCGCCAGAGTGTAGGTGATGATGGATCTGTTGATGTTGGCAAGTTTGAGAAGCATACGAAGGGGATAGGAATGAAGCTGTTGGAGAAGATGGGTTATAAAGGAGGTGGTCTTGGGAAGAATGAGCAAGGTATTTTGGCTCCTATTGAGGCGAAACTGAGGGCTAAGAATTCGGGTATTGGGTTTAATGACTCCAAGGAGACTACTACTACACCGTTGCCGGCGGCTTTGCAGCTGGATAAGAAGATTGCGCCGGGAGTTACCCAACCTAGGGTTGGCAGAACAAAAGAAAGGTTGTGGTCAAAGCAATTGAGGTCGAAGAAGAAGAAAGACGAGGAAGAGTATATAACTGCTGAGGAGTTGTTGGCAAGCAAGGAAGAACAGGATTTGGAGGTTGTTCAGAAGGTTTATGATATGAGAGGGCCGCAGGTTCGAGTAATTACAAATTTGTCTGATTTGAATGCTGAGGAGAAAGCAAAGGAGAATGATGTCCCGATGCCGGAACTTCAGCATAATGTTGGGTTAATAGTTCGGTTGGCTGAGGCTGACATCCAAGAGATTGATAGAGATTTGAGGAGAGAGAGGGAGACTGCACTTAGCTTGAAAAAGGAAAAAGAGAAGTTCGAAACTGAGGCAGCATTTCAAAAGAAGCAGCTGGATAATTTTGAGGAAATAATGAGTGTGTTGGACCAAGTCGGAGAAGAGAATACTTTAGGAACATTAACGTTGGATTCCCTTGCTCAATGCTTTAGGGACTTGCATAAAAGATTTGCTGATAACTACAAGTTGTGTAACTTGTCATGCGTTGCTTGCTCATATGCTCTGCCTTTGTTTATCAGAGTGTTCCAAGGATGGGATCCTCTTCGAAATCCATCTCATGGGTTGGAGTTGGTCTCACAGTGGAGAACTTTGCTTCAAGTAGAAGAATGTCTCGATATATGGGATGTATCATCACCTTACACTCAGTTGGTTTCTGAGGTTGTGTTACCAGCTGTCAGAATATCTGGCATCAATACCTGGCAGGCTCGGGATCCGGAGCCAATGTTACGGTTTCTGGAGTCGTGGGAAAAGTTGCTTCCTTCTTCACTCCTTGCCACCATATTGGACAATGTGGTCATGCCAAAACTATCAAGTGCTGTAGATACTTGGGAACCACATCGTGAGACCATTCCTATCCACACTTGGGTGCATCCATGGCTACCTCTGCTAGGGAACAAGTTGGAGGGTATATACCAGGTGATTCGTTTTAAATTGAGTACTGTTCTTGGTGCCTGGCACCCAAGTGATGGCTCTGCTTATGCTATATTGTCTCCTTGGAAGATGGTATTTGATGCTGCTAGTTGGGAACAACTTATGCTTCGTTTTATTGTGCCCAAGTTGCAGCTTGTCTTGCAAGAGTTCCACGTCAACCCGGCAAGTCAGAATCTTGACCAATTTTATTGGGTAATGAACTGGGCTTCTGCTATTCCATTTCATCTGATGGTTGATATGATGGAGAAATTCTTCTTTGCTAAATGGCTTCAGGTTTTGTATCATTGGTTGTGCTCTAATCCTAACATCGAAGAAGTTACAAAATGGTATTTGGGCTGGAAAGAACTTATTCCGAAAGAACTTTTGGCAAATGAGAGTATTCGATACCAGCTTAATCGTGGTCTTGATATGATGATCCAAGCTGTTGAAGGTATGGAGGTGGTCCAACCTGGTTTAAAAGAGAATATCAGCTATCTTAGGGTACTTGAGCAAAGGCAATTTGAGGCTCAGCAGAAAGCAGCAGCCTATGCTCAACAGCAAGCTGCTGCAAGCTTGGGTGGTGCTGTCAACGCAGATGGTGTGGCTGGTGTGCGTGAATTGAGCCTGAAAGAAGCCATCGAGGCCCATGCCCTGCAACATGGTTTACTATTCAAACTTAAACCTGGTAGAATGCACAACGGTCATCAAATCTATGGGTTTGGTAATGTCAGCATAATAATAGACTCTCTAAATCAAAAGGTATATGCCCAAAATGAGGAAACATGGTCTTTGGAATCTGTTCAAGGCTTGCTAGAGTTGCATAATAAATCCGCTAGTAAAAGACGCTGA 2634 0.4427 MDEDQEMERFGTENDFEGAQWIGGEFYYKKRKEKRTQTKDDVLYGVFADSDDDDDYSSRKRRKDRDLSKKPDLTKPVNFVSTGTFMPNEDVVDKNSSKEQDEKEESHGGEDRPGLGLGMGFASTSGSGLGFNNSSYGANGTERIDDSDENGENSFLPTAFGKKIKEGAMRREREKERERLEKKRGQRQSVGDDGSVDVGKFEKHTKGIGMKLLEKMGYKGGGLGKNEQGILAPIEAKLRAKNSGIGFNDSKETTTTPLPAALQLDKKIAPGVTQPRVGRTKERLWSKQLRSKKKKDEEEYITAEELLASKEEQDLEVVQKVYDMRGPQVRVITNLSDLNAEEKAKENDVPMPELQHNVGLIVRLAEADIQEIDRDLRRERETALSLKKEKEKFETEAAFQKKQLDNFEEIMSVLDQVGEENTLGTLTLDSLAQCFRDLHKRFADNYKLCNLSCVACSYALPLFIRVFQGWDPLRNPSHGLELVSQWRTLLQVEECLDIWDVSSPYTQLVSEVVLPAVRISGINTWQARDPEPMLRFLESWEKLLPSSLLATILDNVVMPKLSSAVDTWEPHRETIPIHTWVHPWLPLLGNKLEGIYQVIRFKLSTVLGAWHPSDGSAYAILSPWKMVFDAASWEQLMLRFIVPKLQLVLQEFHVNPASQNLDQFYWVMNWASAIPFHLMVDMMEKFFFAKWLQVLYHWLCSNPNIEEVTKWYLGWKELIPKELLANESIRYQLNRGLDMMIQAVEGMEVVQPGLKENISYLRVLEQRQFEAQQKAAAYAQQQAAASLGGAVNADGVAGVRELSLKEAIEAHALQHGLLFKLKPGRMHNGHQIYGFGNVSIIIDSLNQKVYAQNEETWSLESVQGLLELHNKSASKRR 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2357g00003 877 Pfam GC-rich sequence DNA-binding factor-like protein 428 695 IPR022783 -
Gabi2357g00003 877 PANTHER TUFTELIN-INTERACTING PROTEIN 11-RELATED 1 863 IPR045211 GO:0000390
Gabi2357g00003 877 ProSiteProfiles G-patch domain profile. 205 250 IPR000467 GO:0003676
Gabi2357g00003 877 Pfam Tuftelin interacting protein N terminal 4 105 IPR022159 -
Gabi2357g00003 877 Coils Coil 286 313 - -
Gabi2357g00003 877 SMART G-patch_5 203 248 IPR000467 GO:0003676
Gabi2357g00003 877 MobiDBLite consensus disorder prediction 52 72 - -
Gabi2357g00003 877 MobiDBLite consensus disorder prediction 125 141 - -
Gabi2357g00003 877 Coils Coil 362 410 - -
Gabi2357g00003 877 MobiDBLite consensus disorder prediction 75 91 - -
Gabi2357g00003 877 MobiDBLite consensus disorder prediction 164 200 - -
Gabi2357g00003 877 PIRSF TFIP11 1 872 IPR024933 -
Gabi2357g00003 877 MobiDBLite consensus disorder prediction 33 200 - -
Gabi2357g00003 877 Pfam G-patch domain 205 246 IPR000467 GO:0003676
Gabi2357g00003 877 MobiDBLite consensus disorder prediction 92 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2357g00003 Gabi-Chr2357 13219 18065 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2357g00003 205 246 C2H2 Transcription Factor Family AT5G26610 50.000 5.10e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2357g00003 K13103 - gmx:100781621 1442.17