Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2355g00001 ATGGTGTCGGGGTCAGGGATTTGCGCGAAGAGGGTGGTGGTGGACGCTCGCCACCACATGCTTGGTCGTTTGGCGTCGATCGTTGCGAAGGAACTCCTCAACGGCCAGAAGGTGGTGGTCGTAAGGTGCGAGGAGATATGTATCTCCGGCGGCCTCGTAAGGCAGAAGATGAAGTACATGCGGTTCCTTCGCAAGCGCATGAACACCAAACCCTCTCACGGTCCCATTCACTTTCGTGCCCCCGCTAAGATCTTCTGGCGCACCGTTCGTGGAATGATGCCACATAAGACCAAGCGAGGGGAAGCTGCTCTTGATAGATTGAAGGTTGTGGAGGGAATCCCTCCTCCATATGACAAGATAAAGAGGATGGTTGTCCCTGATGCTCTCAAGGTGTTGAGGCTTCAAAAGGGACACAAACATTGCTTGCTCGGCAAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAAACAGGAGCTTGAAAAGAAGAGAAAGGAAAGAGCGCAATTGGCTTATGAGACAAAGAAGCAGCTCAACAAATTAAGGGTGAAAGCTGAGAAAATTGCAGATGAGAAACTTGGCTCCCAACTTGAAGTTCTTGCTCCTGTCAAGTACTGA 624 0.5016 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMMPHKTKRGEAALDRLKVVEGIPPPYDKIKRMVVPDALKVLRLQKGHKHCLLGKLSSEVGWNYYDTIKQELEKKRKERAQLAYETKKQLNKLRVKAEKIADEKLGSQLEVLAPVKY 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2355g00001 207 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
Gabi2355g00001 207 Pfam Ribosomal protein L13 10 115 IPR005822 GO:0003735|GO:0005840|GO:0006412
Gabi2355g00001 207 Coils Coil 155 175 - -
Gabi2355g00001 207 NCBIfam 50S ribosomal protein L13 12 154 IPR005755 GO:0003735|GO:0006412|GO:0015934
Gabi2355g00001 207 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Gabi2355g00001 207 Gene3D - 157 207 - -
Gabi2355g00001 207 Gene3D Ribosomal protein L13 8 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Gabi2355g00001 207 FunFam 60S ribosomal protein L13a 155 207 - -
Gabi2355g00001 207 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Gabi2355g00001 207 PANTHER RIBOSOMAL PROTEIN L13 1 187 IPR005822 GO:0003735|GO:0005840|GO:0006412
Gabi2355g00001 207 FunFam 60S ribosomal protein L13a-4 8 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2355g00001 Gabi-Chr2355 23583 25291 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2355g00001 1 207 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 87.440 1.31e-136 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2355g00001 K02872 - gmx:100813340 383.645