Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2354g00001 ATGACCATGAAGTCTGAGTCACTGGATCATTGGAGGAATTACTTTAGCACTGCCAAGTCGTCTGATATATTCGACATCATTCATCATTCCATCATGGTGGCAGCTTCGGATTTCCCCAAGGAGTTCAAGCTGAGGAGAGATGGGATTGCTGAGAGATTGTTCTCTTGCATGTTGACGACTAAATGTTTGGGGTGTGAAAGGGTGGATCATGAAGACGTTGATGATGGGCTTGCCCTTGAAGCAGGGGCAAGTGAAGACGGCAAGGTCAACAGCATTAGAGATGGCCGTGGAGAGGTTTTGAGGATCCAAAAAGTTCTGCTTAACTTTAAAGAAGAGTCTGACTCTGTGTTATTTGAGTCATTGAGGAGGCTCCAGCTGATGGAACTCAAAGTGAATCTTCTAGAGGAAACTAAGATTGGAAAGGCTGTCATTCCTCTCCGAAAGCATGGATCAAAGGATATTAGTCAACTCGCACGAACTCTTATTGATTGCTGGAAAGAAATGGTAGATGAGTGGTGCAAGGCTTCCACTACCACAGCTATTGCAGCTTCAGAAGGCACTCCAGATTCTGTAAATCCATCTAGTGGACAATTCAAATCTGAGGCTTCCATTGAGCCATCCATCACTGCCAAGGAGAGTCAGCAACCAAGGAAAAATGAGGTTGCTGTGAGGCTAAATAAACCAGAAACTGTTGATAATTTCCCTGTCAGACCCCCAAAATCAACTATGCAGCGAAAAAGCAATATGGAGCCAAAGATGCAGCCAAAAATAGAGAACAATACAATCCCAAAGAAGCCTCCCATGATTCAGAAAGATAAATCCAAGCTTTCAGATGAAGAAACTGCAGTCCAAGTAAAGCTAGAGGCCACTAAGAGGAAAATTCAGGAGCGTTATCAACGAGTTGAAAATGCTAAGAGGCAGAGGACAATACAAGTTCTGGAAATAAATGATCTCCCCAAGCAAGGGAGTGGCCAACGAAATTCACATTTCAAACCTGGGAATCACAATAGGCAGTGGGCCAATGCACGAAGATAG 1035 0.4396 MTMKSESLDHWRNYFSTAKSSDIFDIIHHSIMVAASDFPKEFKLRRDGIAERLFSCMLTTKCLGCERVDHEDVDDGLALEAGASEDGKVNSIRDGRGEVLRIQKVLLNFKEESDSVLFESLRRLQLMELKVNLLEETKIGKAVIPLRKHGSKDISQLARTLIDCWKEMVDEWCKASTTTAIAASEGTPDSVNPSSGQFKSEASIEPSITAKESQQPRKNEVAVRLNKPETVDNFPVRPPKSTMQRKSNMEPKMQPKIENNTIPKKPPMIQKDKSKLSDEETAVQVKLEATKRKIQERYQRVENAKRQRTIQVLEINDLPKQGSGQRNSHFKPGNHNRQWANARR 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2354g00001 344 MobiDBLite consensus disorder prediction 184 220 - -
Gabi2354g00001 344 MobiDBLite consensus disorder prediction 240 255 - -
Gabi2354g00001 344 MobiDBLite consensus disorder prediction 184 278 - -
Gabi2354g00001 344 ProSiteProfiles TFIIS N-terminal domain profile. 97 172 IPR017923 -
Gabi2354g00001 344 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 90 183 IPR035441 -
Gabi2354g00001 344 Coils Coil 284 307 - -
Gabi2354g00001 344 CDD TFIIS_I 98 170 - -
Gabi2354g00001 344 SMART TFS2_5 99 171 IPR003617 GO:0005634
Gabi2354g00001 344 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 332 IPR044805 -
Gabi2354g00001 344 Pfam TFIIS helical bundle-like domain 121 169 IPR017923 -
Gabi2354g00001 344 MobiDBLite consensus disorder prediction 315 344 - -
Gabi2354g00001 344 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 97 177 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2354g00001 Gabi-Chr2354 27653 29956 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gabi2354g00001 Med26 2.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2354g00001 - - gmx:100775579 370.163