Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2348g00023 ATGGACAAAAAACCATGCAACTCATCTCAAGATCCTGAAGTGAGAAAGGGACCATGGACCATGGAAGAAGACTTGATCTTGATCAACTATATTGCAAATCATGGTGAAGGTGTTTGGAACTCCTTAGCCAAAGCTGCAGGTCTTAAACGTACCGGAAAGAGTTGCCGGCTCCGGTGGCTAAACTATCTCCGTCCGGATGTTAGAAGAGGAAATATTACACCTGAGGAACAGCTTTTGATCATGGAGCTTCATGCAAAGTGGGGAAACAGGTGGTCCAAAATTGCAAAGCATCTTCCGGGAAGAACTGACAATGAGATTAAGAACTTCTGGAGGACTAGGATTCAGAAACACATAAAGCAAGCTGAGAACTTCCAACAACAGAATTCAGAGATAAATGATCATCATCACCATCATGCAAGCAGTAGCCAAATGTCCACCATGGCAGAACCAATGGAGACTTATTCTCCAACTTCATACCAAGGAACTTTGGAGCCATTTCCAACTCAGTTCCCTACAATCACTGATCAGTCTAGTTGTTGTACCAATGACAGCAACTATTGGACCATGGAGGATATCTGGTCTATGCAATTACTCAATGGGGATTGA 606 0.4323 MDKKPCNSSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHIKQAENFQQQNSEINDHHHHHASSSQMSTMAEPMETYSPTSYQGTLEPFPTQFPTITDQSSCCTNDSNYWTMEDIWSMQLLNGD 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2348g00023 201 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 149 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gabi2348g00023 201 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Gabi2348g00023 201 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Gabi2348g00023 201 Gene3D - 73 146 - -
Gabi2348g00023 201 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Gabi2348g00023 201 MobiDBLite consensus disorder prediction 141 174 - -
Gabi2348g00023 201 MobiDBLite consensus disorder prediction 132 174 - -
Gabi2348g00023 201 SMART sant 15 65 IPR001005 -
Gabi2348g00023 201 SMART sant 68 116 IPR001005 -
Gabi2348g00023 201 CDD SANT 73 112 IPR001005 -
Gabi2348g00023 201 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Gabi2348g00023 201 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Gabi2348g00023 201 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Gabi2348g00023 201 CDD SANT 18 63 IPR001005 -
Gabi2348g00023 201 Coils Coil 114 134 - -
Gabi2348g00023 201 FunFam Myb-related protein 305 73 144 - -
Gabi2348g00023 201 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Gabi2348g00023 201 Gene3D - 16 68 - -
Gabi2348g00023 201 FunFam Myb transcription factor 16 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2348g00023 Gabi-Chr2348 262852 266022 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2348g00023 10 201 MYB Transcription Factor Family AT3G01530 60.104 7.94e-80 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2348g00023 Myb_DNA-binding 6.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2348g00023 K09422 - gmx:778046 360.918