Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2348g00016 ATGGAGCATATTTCGGAAAAAAGGTTTCCTCTCAATGCAGAAGATTACAAGTTATATGAAGAAGTTGGTGAAGGTGTTAGTGCCTCGGTATACAGGGCTCTCTGCATTCCACTCAATGAGATAGTCGCCATCAAGGTTCTTGATCTAGAGAAATGCAATAATGATTTGGATGGCATTCGGAGAGAAGTACAGACCATGAGCTTGATTGATCATCCAAATGTTTTGCGGGCTTATTGCTCTTTTACTGCTGGACACAATCTTTGGGTTGTGATGCCATACATGGCCGGGGGTTCTTGCCTTCATATTATGAAATCTGGCTATCCTGAGGGTTTTGAAGAGCCTGTTATTGCTACTTTATTGCGTGAGGTTCTCAAAGCTCTTGTCTATCTTCATGCCCATGGTCACATACATAGAGATGTTAAGGCTGGGAATATTTTGCTTGATTCTAATGGTGCAGTCAAACTAGCTGATTTTGGAGTGTCAGCGTGTATGTTTGATGCTGGAGATAGGCAACGCTCAAGAAATACTTTTGTTGGAACACCTTGCTGGATGGCTCCTGAAGTTATGCAGCAATTACATGGATATGATTTTAAAGCAGATATATGGTCATTTGGTATAACAGCACTTGAACTTGCTCATGGACATGCCCCTTTTTCCAAGTATCCACCGATGAAAGTTTTGCTTATGACTTTGCAAAATGCCCCTCCAGGTCTTGATTATGAAAGAGACAAGAGATTTTCGAAGACTTTCAAAGAGTTGGTTGCAACCTGCTTAGTGAAAGACCCAAAGAAACGTCCAAGTTCAGAAAAGCTTTTAAAGCACCACTTCTTTAAACATGCACGTGCCACTGAATATCTAGCTCGCACCATTCTTGATGGCCTTGCTCCATTAGGAGATCGTTTTAGAATGCTGAAGGCTAAAGAGGCAGATTTATTGGTGCAGAACAAGGCTCTTTACGAGGACAAGGAGCAATTATCTCAGAAAGAATATATTCGTGGAATTAGTGCCTGGAATTTTAACCTGGATGATTTAAAAAGTCAAGCTGCTCTTATTCAAGAAGATGACATGCCAAATGCAGAAGAGCCAGATATGGATAAGAAGCCAAAGGATATATCTGATGGCTTCAGGGTTCCAACAGAGGGGCTATCTGCCGTAGCAGCTAATCATTCAGATGGTGCACCCATGCTGGACAAGGAGGATGGATTCAATAATCTTCAGGATTTGGAGAGTTCACTTGCTTCATTTCCTATTAAACCTCTTGAAGCACTTAAAGATTGTTTTGATATCTGTGAGGACGATGTCAATGATGCTAGTCCGAGAGATATGGATCATGATTATGGAAGAATTGACAATGAAAGTTCTGGGCCAAGCAGTTCGTTGCCACAAAATGCTACAAATCAGCAGAAAAAGTTTTTGAGTGGTTCCTTGCTACCTGATAATTTTCTGTCTCCCAAAAAGGTTGTTACCGATGGGGACAGGGATTTTCTTCAAACAAAATATTCTTCTGAGCGGAATCATAGTGGTCCATTGTTGTATCGGCAGAAGAGAGATACCAACAACCTTCCAGTGGTTGATGACACATCAGAAGGAGCAGTTGTCCAGCGTAGGGGGCGGTTTAAGGTTACATCAGCCGATCCCAGTCCAATGGGTCCTTCAAACTGCACTTCTGGCTCAGTTGGTGGAGGTACTGGCAGTCCACCAAACCAGAACATCATGGCTGCCACAATTCTTCCATCACTGCAGTACATCTTGCAACAGAACAGCTTGCAGAGGGAAGAAATTATTAAATTAATAAAGTATGCAGAGCAATCTTGTGGCAAGAATACAGAATCAGCAGAGGCAGGAACAGTTGATCTTGTGCAGGTATCACCTGCGACAATGAGGGAGAGAGAGTTGCATTTTCAGGTGAATCAACTACAACAGAGCATTGGGAGCCTTGTTGAGGAATTGCAAAGACAAAAGATGAAAAATGTTCAGTTAGAGAAACAGTTGAGCTGTATGGTTAACAAAGTTGATAAATGA 2022 0.4194 MEHISEKRFPLNAEDYKLYEEVGEGVSASVYRALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMSLIDHPNVLRAYCSFTAGHNLWVVMPYMAGGSCLHIMKSGYPEGFEEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILLDSNGAVKLADFGVSACMFDAGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKTFKELVATCLVKDPKKRPSSEKLLKHHFFKHARATEYLARTILDGLAPLGDRFRMLKAKEADLLVQNKALYEDKEQLSQKEYIRGISAWNFNLDDLKSQAALIQEDDMPNAEEPDMDKKPKDISDGFRVPTEGLSAVAANHSDGAPMLDKEDGFNNLQDLESSLASFPIKPLEALKDCFDICEDDVNDASPRDMDHDYGRIDNESSGPSSSLPQNATNQQKKFLSGSLLPDNFLSPKKVVTDGDRDFLQTKYSSERNHSGPLLYRQKRDTNNLPVVDDTSEGAVVQRRGRFKVTSADPSPMGPSNCTSGSVGGGTGSPPNQNIMAATILPSLQYILQQNSLQREEIIKLIKYAEQSCGKNTESAEAGTVDLVQVSPATMRERELHFQVNQLQQSIGSLVEELQRQKMKNVQLEKQLSCMVNKVDK 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2348g00016 673 FunFam Serine/threonine-protein kinase BLUS1 5 93 - -
Gabi2348g00016 673 Coils Coil 636 670 - -
Gabi2348g00016 673 Gene3D Transferase(Phosphotransferase) domain 1 97 309 - -
Gabi2348g00016 673 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2348g00016 673 MobiDBLite consensus disorder prediction 546 565 - -
Gabi2348g00016 673 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Gabi2348g00016 673 SUPERFAMILY Protein kinase-like (PK-like) 13 304 IPR011009 -
Gabi2348g00016 673 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 6 654 IPR047173 GO:0043539
Gabi2348g00016 673 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2348g00016 673 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2348g00016 673 FunFam serine/threonine-protein kinase BLUS1 isoform X1 97 330 - -
Gabi2348g00016 673 MobiDBLite consensus disorder prediction 438 468 - -
Gabi2348g00016 673 MobiDBLite consensus disorder prediction 506 565 - -
Gabi2348g00016 673 CDD STKc_OSR1_SPAK 14 277 - -
Gabi2348g00016 673 MobiDBLite consensus disorder prediction 451 468 - -
Gabi2348g00016 673 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2348g00016 Gabi-Chr2348 163477 176296 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2348g00016 1 672 MAP Kinase Kinase Kinase Kinase AT5G14720 66.909 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Gabi2348g00016 Pkinase 6.4e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2348g00016 K08835 - gmx:100784402 1153.27