Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2344g00007 ATGTTAGATCTTAATCTCAATGCGGACTCGACCGATTCGACTCAGAACGGCGACTCGCCGGTGCTGCTGGGGAATTTTCCAGAAGGTTCATGGAATCAAATGGCGGAGTCGGGGACCTCGAATTCCTCCGTCGTCAATGCGGACGGGTCCAGCAACTGTGGAGGCGACGAGGACTCGTGCTCGACGCGCGTCGACGACGTGTTTACATTCAATTTCGATATCCTTAAAGTGGAAGGAGGGAACGGCGTCGTAACGAAGGAGCTGTTCCCCGTGATTGGAGGAGGTAAAGGAGAGGACGAGGGCGGGTCAGGGAATTGGCAAGGGCAGGCTACGTCGTCGTTTCCACCGAGGAATGGGTTGGTTGATCTCTTGTACGATCGCCAGGGCGGGAACGGCGAGGTGAAGAAGGTTCAAGTTCAGGTTCAGCAACGAGCGAAGAAAAGTAGGAGGGGACCAAGGTCTCGGAGCTCGCAATACAGAGGGGTCACCTTCTACAGGAGGACCGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACAGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCAGGGGAGTTGATGCTGACATCAATTTCAATCTGAGTGATTATGAGGATGATCTTAAACAGATGAAGAATTTATCCAAGGAGGAATTTGTACACATACTCCGTCGCCATAGTACTGGTTTCTCAAGGGGGAGTTCAAAATACCGAGGAGTTACACTCCACAAATGTGGCCGTTGGGAAGCTCGAATGGGGCAATTCCTTGGCAAAAAGGCTTATGACAAGGCAGCTATCAAATGCAGTGGAAGGGAAGCAGTGACTAACTTTGAGCCAAGTTCATACCAAGGAGAGATGAAACCTGCAGCCATTAATGAAGGTGGCAGTCACAATCTTGACCTCAATTTGGGCATAGCGACTCCAGGACCTGGTCCCAAAGAAAATTGGGGGCAACTTCAGTTCCCCTCCGTACCTTACAACATGCACGCAGGAACAAATTCAATGATGGAAACAAATGTTAATTCTAGAACTGGAAATCCATCTTTGAAAAGGCTGGTTGTAACTGAAGAGCGACCTTTTGTATGGAATGGCATGTCTACTAGTTTCTTTCCCAGTGAGCAGGAAAAAGCAGATAGAATCAGCATAGATCCATCAAAAGGACTCCCCGATTGGGCGTGGCAAACGCATGGCCAGGTCACTGCTACCCCAGTACCACAGTTCTCTGCTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCATCGACTTCCATCTTTCCGACAAGATCTATGAACTCAATTCCCCAGAGTCTCTGTTTTACTTCATCCAGCGCACCTAGCAGCAACACATCTCAATATTATTACCAGGTTAAGCCCCCGCAGGCACCACCCTAG 1440 0.4931 MLDLNLNADSTDSTQNGDSPVLLGNFPEGSWNQMAESGTSNSSVVNADGSSNCGGDEDSCSTRVDDVFTFNFDILKVEGGNGVVTKELFPVIGGGKGEDEGGSGNWQGQATSSFPPRNGLVDLLYDRQGGNGEVKKVQVQVQQRAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYEDDLKQMKNLSKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIKCSGREAVTNFEPSSYQGEMKPAAINEGGSHNLDLNLGIATPGPGPKENWGQLQFPSVPYNMHAGTNSMMETNVNSRTGNPSLKRLVVTEERPFVWNGMSTSFFPSEQEKADRISIDPSKGLPDWAWQTHGQVTATPVPQFSAAASSGFSISATFPSTSIFPTRSMNSIPQSLCFTSSSAPSSNTSQYYYQVKPPQAPP 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2344g00007 479 Gene3D AP2/ERF domain 157 215 IPR036955 GO:0003700|GO:0006355
Gabi2344g00007 479 Gene3D AP2/ERF domain 249 293 IPR036955 GO:0003700|GO:0006355
Gabi2344g00007 479 SUPERFAMILY DNA-binding domain 157 215 IPR016177 GO:0003677
Gabi2344g00007 479 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 128 329 - -
Gabi2344g00007 479 FunFam AP2-like ethylene-responsive transcription factor 157 216 - -
Gabi2344g00007 479 MobiDBLite consensus disorder prediction 136 159 - -
Gabi2344g00007 479 MobiDBLite consensus disorder prediction 1 21 - -
Gabi2344g00007 479 SUPERFAMILY DNA-binding domain 249 293 IPR016177 GO:0003677
Gabi2344g00007 479 SMART rav1_2 158 220 IPR001471 GO:0003700|GO:0006355
Gabi2344g00007 479 SMART rav1_2 250 298 IPR001471 GO:0003700|GO:0006355
Gabi2344g00007 479 ProSiteProfiles AP2/ERF domain profile. 158 214 IPR001471 GO:0003700|GO:0006355
Gabi2344g00007 479 MobiDBLite consensus disorder prediction 1 50 - -
Gabi2344g00007 479 MobiDBLite consensus disorder prediction 458 479 - -
Gabi2344g00007 479 CDD AP2 158 216 IPR001471 GO:0003700|GO:0006355
Gabi2344g00007 479 Pfam AP2 domain 158 206 IPR001471 GO:0003700|GO:0006355
Gabi2344g00007 479 MobiDBLite consensus disorder prediction 458 472 - -
Gabi2344g00007 479 CDD AP2 249 294 IPR001471 GO:0003700|GO:0006355
Gabi2344g00007 479 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2344g00007 Gabi-Chr2344 78494 82551 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2344g00007 1 479 AP2-EREBP Transcription Factor Family AT5G60120 44.618 1.98e-102 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2344g00007 AP2 6.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2344g00007 K09284 - gmx:100788303 750.74