Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2344g00005 ATGTTAGATCTTAATCTCAATGCGGACTCGACCGATTCGACTCAGAACGGCGACTCGCCGGTGCTGCTGGGGAATTTTCCAGAAGGTTCATGGAATCAAATGGCGGAGTCGGGGACCTCGAATTCCTCCGTCGTCAATGCGGACGGGTCCAGCAACTGTGGAGGCGACGAGGACTCGTGCTCGACGCGCGTCGACGACGTGTTTACATTCAATTTCGATATCCTTAAAGTGGAAGGAGGGAACGGCGTCGTAACGAAGGAGCTGTTCCCCGTGATTGGAGGAGGTAAAGGAGAGGACGAGGGCGGGTCAGGGAATTGGCAAGGGCAGGCTACGTCGTCGTTTCCACCGAGGAATGGGTTGGTTGATCTCTTGTACGATCGCCAGGGCGGGAACGGCGAGGTGAAGAAGGTTCAAGTTCAGGTTCAGCAACGAGCGAAGAAAAGTAGGAGGGGACCAAGGTCTCGGAGCTCGCAATACAGAGGGGTCACCTTCTACAGGAGGACCGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACAGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCAGGGGAGTTGATGCTGACATCAATTTCAATCTGAGTGATTATGAGGATGATCTTAAACAGATGAAGAATTTATCCAAGGAGGAATTTGTACACATACTCCGTCGCCATAGTACTGGTTTCTCAAGGGGGAGTTCAAAATACCGAGGAGTTACACTCCACAAATGTGGCCGTTGGGAAGCTCGAATGGGGCAATTCCTTGGCAAAAAGTATATATATCTTGGGTTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAATGCAGTGGAAGGGAAGCAGTGACTAACTTTGAGCCAAGTTCATACCAAGGAGAGATGAAACCTGCAGCCATTAATGAAGGTGGCAGTCACAATCTTGACCTCAATTTGGGCATAGCGACTCCAGGACCTGGTCCCAAAGAAAATTGGGGGCAACTTCAGTTCCCCTCCGTACCTTACAACATGCACGCAGGAACAAATTCAATGATGGAAACAAATGTTAATTCTAGAACTGGAAATCCATCTTTGAAAAGGCTGGTTGTAACTGAAGAGCGACCTTTTGTATGGAATGGCATGTCTACTAGTTTCTTTCCCAGTGAGGAAAAAGCAGATAGAATCAGCATAGATCCATCAAAAGGACTCCCCGATTGGGCGTGGCAAACGCATGGCCAGGTCACTGCTACCCCAGTACCACAGTTCTCTGCTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCATCGACTTCCATCTTTCCGACAAGATCTATGAACTCAATTCCCCAGAGTCTCTGTTTTACTTCATCCAGCGCACCTAGCAGCAACACATCTCAATATTATTACCAGGTTAAGCCCCCGCAGGCACCACCCTAG 1482 0.4899 MLDLNLNADSTDSTQNGDSPVLLGNFPEGSWNQMAESGTSNSSVVNADGSSNCGGDEDSCSTRVDDVFTFNFDILKVEGGNGVVTKELFPVIGGGKGEDEGGSGNWQGQATSSFPPRNGLVDLLYDRQGGNGEVKKVQVQVQQRAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYEDDLKQMKNLSKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCSGREAVTNFEPSSYQGEMKPAAINEGGSHNLDLNLGIATPGPGPKENWGQLQFPSVPYNMHAGTNSMMETNVNSRTGNPSLKRLVVTEERPFVWNGMSTSFFPSEEKADRISIDPSKGLPDWAWQTHGQVTATPVPQFSAAASSGFSISATFPSTSIFPTRSMNSIPQSLCFTSSSAPSSNTSQYYYQVKPPQAPP 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2344g00005 493 SUPERFAMILY DNA-binding domain 157 215 IPR016177 GO:0003677
Gabi2344g00005 493 SUPERFAMILY DNA-binding domain 249 308 IPR016177 GO:0003677
Gabi2344g00005 493 MobiDBLite consensus disorder prediction 470 493 - -
Gabi2344g00005 493 FunFam AP2-like ethylene-responsive transcription factor 249 309 - -
Gabi2344g00005 493 FunFam AP2-like ethylene-responsive transcription factor 157 216 - -
Gabi2344g00005 493 MobiDBLite consensus disorder prediction 136 159 - -
Gabi2344g00005 493 MobiDBLite consensus disorder prediction 1 21 - -
Gabi2344g00005 493 SMART rav1_2 158 220 IPR001471 GO:0003700|GO:0006355
Gabi2344g00005 493 SMART rav1_2 250 313 IPR001471 GO:0003700|GO:0006355
Gabi2344g00005 493 ProSiteProfiles AP2/ERF domain profile. 158 214 IPR001471 GO:0003700|GO:0006355
Gabi2344g00005 493 ProSiteProfiles AP2/ERF domain profile. 250 307 IPR001471 GO:0003700|GO:0006355
Gabi2344g00005 493 Gene3D AP2/ERF domain 157 215 IPR036955 GO:0003700|GO:0006355
Gabi2344g00005 493 Gene3D AP2/ERF domain 249 308 IPR036955 GO:0003700|GO:0006355
Gabi2344g00005 493 MobiDBLite consensus disorder prediction 470 486 - -
Gabi2344g00005 493 MobiDBLite consensus disorder prediction 1 50 - -
Gabi2344g00005 493 CDD AP2 158 216 IPR001471 GO:0003700|GO:0006355
Gabi2344g00005 493 CDD AP2 249 309 IPR001471 GO:0003700|GO:0006355
Gabi2344g00005 493 Pfam AP2 domain 249 296 IPR001471 GO:0003700|GO:0006355
Gabi2344g00005 493 Pfam AP2 domain 158 206 IPR001471 GO:0003700|GO:0006355
Gabi2344g00005 493 PRINTS Ethylene responsive element binding protein signature 251 262 IPR001471 GO:0003700|GO:0006355
Gabi2344g00005 493 PRINTS Ethylene responsive element binding protein signature 289 309 IPR001471 GO:0003700|GO:0006355
Gabi2344g00005 493 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 128 344 - -
Gabi2344g00005 493 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2344g00005 Gabi-Chr2344 78494 82551 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2344g00005 1 493 AP2-EREBP Transcription Factor Family AT5G60120 43.346 4.48e-98 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gabi2344g00005 AP2 4.3e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2344g00005 K09284 - gmx:100788303 745.347