Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2342g00020 ATGGGTGTGGAGAAAATAATTTGGTATAACCCAATCCCTTGGTGTTCTAGAACCAGCGTTGAGGAACAGGATATAGTGGATGTTTTTCTTCAATTGAAGAAACAACGTTCCTTTTCAATTGATATCACTTATGATCACATCAAAGGGGTCCTCGTGGACCTGCTTATAGCAGCAACGGATACCACTGCAGTCACATCAGTTTGGGCTATGACGACCCTCATTAAAAGCCCAAGAGTAATGAAGAGAGTTCAAGAAGAAATTAGGAACTTGGGAGGTAAAAAAGATTTCTTAGATGAAGATGATATTCAAAAAAATTCGTATTTGAAGGCAGTGATAAAAGAGACATTAAGATTACACCTACCAACCCCACTACTTGTGCCAAGAGAATCAAGTAAAAAATGCATTATAGATGGCTATCAAATTCCAGCCAAGACATTAGTGTATGTGAATGCTTGGGCTATTCATAGAGACCCTAAGGCTTGGAAGGACCCAGAAGCGTTTTATCCTGAGAGATTCTTAGACAGTGCTATAGATTTTAGGGGACAATATTTTGAACTAATTTCTTTTAGAGAAGGTCGCAGAATTTGCCTAGGTTTGCCTATGGGGGTTGCTACATTGGAACTTATCCTAGCTAATCTTCTTAATTCCTTTGATTGGGAATTGCCAAAAGGGTTGGTAAAGGAAGACATAGATACTGAAGTGTTGTCAGGAATTACCCAACACAAGAAGAATCCTCTTTGCCTTTCTGCCAAGTGA 756 0.3915 MGVEKIIWYNPIPWCSRTSVEEQDIVDVFLQLKKQRSFSIDITYDHIKGVLVDLLIAATDTTAVTSVWAMTTLIKSPRVMKRVQEEIRNLGGKKDFLDEDDIQKNSYLKAVIKETLRLHLPTPLLVPRESSKKCIIDGYQIPAKTLVYVNAWAIHRDPKAWKDPEAFYPERFLDSAIDFRGQYFELISFREGRRICLGLPMGVATLELILANLLNSFDWELPKGLVKEDIDTEVLSGITQHKKNPLCLSAK 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2342g00020 251 Gene3D Cytochrome P450 16 247 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi2342g00020 251 PRINTS P450 superfamily signature 110 121 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi2342g00020 251 PRINTS P450 superfamily signature 187 196 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi2342g00020 251 PRINTS P450 superfamily signature 57 74 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi2342g00020 251 PRINTS P450 superfamily signature 196 207 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi2342g00020 251 PANTHER CYTOCHROME P450 71B11-RELATED 20 250 - -
Gabi2342g00020 251 PRINTS E-class P450 group I signature 196 219 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi2342g00020 251 PRINTS E-class P450 group I signature 66 92 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi2342g00020 251 PRINTS E-class P450 group I signature 109 127 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi2342g00020 251 PRINTS E-class P450 group I signature 150 174 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi2342g00020 251 PRINTS E-class P450 group I signature 186 196 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi2342g00020 251 PRINTS E-class P450 group I signature 46 63 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi2342g00020 251 Coils Coil 80 100 - -
Gabi2342g00020 251 SUPERFAMILY Cytochrome P450 21 249 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gabi2342g00020 251 FunFam Predicted protein 55 248 - -
Gabi2342g00020 251 Pfam Cytochrome P450 21 244 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2342g00020 Gabi-Chr2342 175630 178112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2342g00020 23 248 Cytochrome P450 AT3G26330 52.632 2.24e-77 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2342g00020 - - gmx:100801312 366.311