Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2342g00018 ATGTCCGCCTCATCCACTTCCTTTTCACCGGACCAACACCACCACCTCTCTCCCTCCGACCAACTCTGTTATGTCCATTGCAACTTCTGTGACACTGTCCTCGCCGTGAGTGTTCCTTGCTCCAGTTTGTTCAAGATTGTCACAGTGAGATGCGGTCATTGCACCAACCTTCTCTCTGTCAACATGCGTGCACTGCTTCTTACTTCACCTAATCAGCTTCACCTTGGCAACAGCTTCTTCACTCCTCAAAATCTTATGGAGGAGATTAGAAATACACCATCAACAAATATGATGATGAATCAGCTTCCAAACCCAAATGATTTGGTCATGAGCACCATTAGAGGAGGGCCAGAAGAAACCCCTAAGCCTCCACCAGCTAACAGACCTCCAGAGAAGAGACAGAGAGTTCCATCTGCTTACAACCGCTTCATCAAGGATGAGATTCAACGTATCAAAGCTGGGAATCCTGATATAAGCCACAGAGAGGCCTTTAGTGCAGCTGCAAAGAATTGGGCCCATTTTCCACACATTCATTTCGGACTTATGCCTGATCATCAACCCGTGAAGAAAGCTAATGTTCGTCAGGAAGCAGAGGATGTGCTCATGAAAGATGGGTATTACGCACCGGCAAATGTAGGTGTCTCTCCCTACTAG 654 0.4709 MSASSTSFSPDQHHHLSPSDQLCYVHCNFCDTVLAVSVPCSSLFKIVTVRCGHCTNLLSVNMRALLLTSPNQLHLGNSFFTPQNLMEEIRNTPSTNMMMNQLPNPNDLVMSTIRGGPEETPKPPPANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQEAEDVLMKDGYYAPANVGVSPY 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2342g00018 217 CDD HMG-box_SF 135 171 - -
Gabi2342g00018 217 MobiDBLite consensus disorder prediction 113 135 - -
Gabi2342g00018 217 FunFam Axial regulator YABBY 126 198 - -
Gabi2342g00018 217 Gene3D High mobility group box domain 119 200 IPR036910 -
Gabi2342g00018 217 Pfam YABBY protein 18 181 IPR006780 GO:0007275
Gabi2342g00018 217 PANTHER PROTEIN YABBY 6-RELATED 5 193 IPR006780 GO:0007275
Gabi2342g00018 217 SUPERFAMILY HMG-box 124 175 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2342g00018 Gabi-Chr2342 153450 155911 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2342g00018 29 215 C2C2-YABBY Transcription Factor Family AT4G00180 64.115 2.98e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Gabi2342g00018 YABBY 1.3e-73 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2342g00018 K25796 - gmx:100781267 400.208