Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2342g00011 ATGTACATCCTACATAATGCATTTGTCATGCTTCTAACCCTTTTGGTTCCCTTCTTACTTTCCTCTTTCGTTTCTGGTTATTCCTTGAATGACGTTAAGCTTTGGTGCAGCCAAACCCCTAACCCTCAACCATGTGAGTATTTCTTAAGCAATAACCCCACTCACCAACACAAACCAATCAAACACAAATCAGATTTTCTCAAACTATCATTGCAACTTGCTCAAGAACGAGCCCTCAAAGGCCATGCAAACACTCTTTCACTTGGCTCAAAGTGCCGTAACAAACTTGAAACAGCTGCTTGGGCTGATTGTGTTGAGCTTTATGAGCAAACCATCCAAAGGCTCAACAAAACCTTAGACCCAAACACCAAATGCTCCCAAGTTGATGCTCAAACATGGCTCAGCACAGCTCTCACTAACCTTGAGACATGCAAAGGTGGCTTCTACGAGCTTGGGGTCCAAGACTATGTGCTGCCTCTCATGTCCAACAATGTTACTAAGTTGCTAAGCAACACATTGGCTCTTAACAAGGTTCAATATGAAGAACCAAATTACAAAGAAGGGTTCCCAACATGGGTCAAGCCAGGTGATAGAAAGCTCTTGCAGACATCTTCTCCAGCTTCTCAAGCTAACGTAGTGGTGGCACAAGATGGTTCTGGAAAGTTCACAACGGTGAACGCAGCCATAAATGCTGCACCACAAAGTAGTAGCGGAAGGTATGTGATACACGTGAAGGCAGGAATATACAATGAACAAGTTGAGATAAAGGCAAAGAATATAATGTTGGTAGGAGATGGTATTGGTAAGACCATAATCACAGGTAGCAAAAGTGTTGGAGGTGGCACTACAACCTTTCGTTCAGCCACTGTTGCTGTTGTAGGGGATGGATTTATTGCTCAAGATATCACATTTAGGAACACCGGAGGTGCAAAAAACCATCAAGCTGTTGCATTGCGTTCTGGATCAGATTTGTCAGTGTTTTACAAATGTAGTTTTGAAGGATACCAAGACACATTATATGTCCACTCTGAAAGACAATTCTATAGGGAATGTGATATCTATGGCACTGTTGACTTCATCTTTGGTAATGCTGCTGTTGTGTTCCAAAATTGCAACATATTTGCAAGAAACCCTCCCAACAAAGTTAACACAATCACTGCCCAAGGCAGAACCGATCCAAACCAAAACACTGGCATTTCCATTCACAATTGTAGGGTTACCGCTGCCTCGGATTTGAAACCAACCCAAAACTCTGTTAAGACTTATCTTGGAAGACCTTGGAAGCAATATTCTCGAACAGTTGTTATGAAAACTTCTCTTGATAGTTTGATTCATCCATCGGGTTGGTTAGAATGGAGTGGTAATTTTGCCTTAAGTACTCTGTATTATGGAGAGTACATGAACACGGGTCCTGGTTCTTCCACTGCAAGTCGAGTTAAATGGTCAGGTTACCATGTAATAACTAGACCTTCTGAAGCCTCAAAATTCACTGTTGCAAATTTCATTGCTGGAAACTCATGGTTACCTGCCACCAAAGTGCCATTTACGCTTACTCTATAA 1560 0.4199 MYILHNAFVMLLTLLVPFLLSSFVSGYSLNDVKLWCSQTPNPQPCEYFLSNNPTHQHKPIKHKSDFLKLSLQLAQERALKGHANTLSLGSKCRNKLETAAWADCVELYEQTIQRLNKTLDPNTKCSQVDAQTWLSTALTNLETCKGGFYELGVQDYVLPLMSNNVTKLLSNTLALNKVQYEEPNYKEGFPTWVKPGDRKLLQTSSPASQANVVVAQDGSGKFTTVNAAINAAPQSSSGRYVIHVKAGIYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDGFIAQDITFRNTGGAKNHQAVALRSGSDLSVFYKCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVFQNCNIFARNPPNKVNTITAQGRTDPNQNTGISIHNCRVTAASDLKPTQNSVKTYLGRPWKQYSRTVVMKTSLDSLIHPSGWLEWSGNFALSTLYYGEYMNTGPGSSTASRVKWSGYHVITRPSEASKFTVANFIAGNSWLPATKVPFTLTL 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2342g00011 519 Gene3D - 206 519 IPR012334 -
Gabi2342g00011 519 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 178 IPR035513 -
Gabi2342g00011 519 ProSitePatterns Pectinesterase signature 1. 236 255 IPR018040 -
Gabi2342g00011 519 PANTHER PECTINESTERASE 15 511 - -
Gabi2342g00011 519 Pfam Plant invertase/pectin methylesterase inhibitor 32 175 IPR006501 GO:0004857
Gabi2342g00011 519 SMART PMEI_2 27 175 IPR006501 GO:0004857
Gabi2342g00011 519 FunFam Pectinesterase 27 178 - -
Gabi2342g00011 519 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 178 IPR035513 -
Gabi2342g00011 519 SUPERFAMILY Pectin lyase-like 205 518 IPR011050 -
Gabi2342g00011 519 SMART complete 244 422 IPR006633 -
Gabi2342g00011 519 ProSitePatterns Pectinesterase signature 2. 353 362 IPR033131 -
Gabi2342g00011 519 NCBIfam pectinesterase inhibitor domain 10 177 IPR006501 GO:0004857
Gabi2342g00011 519 Pfam Pectinesterase 211 505 IPR000070 GO:0030599|GO:0042545
Gabi2342g00011 519 FunFam Pectinesterase 205 519 - -
Gabi2342g00011 519 CDD PMEI-like_3 34 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2342g00011 Gabi-Chr2342 80504 82804 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2342g00011 7 516 Carbohydrate Esterase AT2G45220 67.710 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2342g00011 K01051 - gmx:100783428 916.761