Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2342g00010 ATGACAACTTTTCGCTTGCTCCTAACACTTTTGGTTCCCTTCTTATTTTCCACTTTCGTTTGTGGTTATTCCTTGAATGACGTTAAGCTTTGGTGCAGCCAAACCCCCAACCCTCAACCATGTGAGTATTTTTTAAGCAATAACCCCACTCACCAACACATACCAATCAAAGACAAAGAAGACTTCTTCAAGCTTTCATTGCAACTTGCGCAAGAGCAAGCACTCAAAGGCCATGCAAACACTCTTTCACTTGGCTCAAAGTGCCGTAACAAACTTGAAACAGCTGCATGGGCTGATTGTCTTGAGCTTTACGAGCAAACCATCCAAAGGCTCAACAAAACCTTAGACCCAAACACCAAATGCTCCCGAGTTGATGCTCAAACATGGCTCAGCACAGCTCTCACTAACCTTGAAACATGCAAAGCTGGCTTCTACGACCTTGGGGTTCAAGACTATGTGCTGCCTCTCATGTCCAACAATGTTACTAAGTTGCTAAGCAATACATTGGCTCTTAACAAGGTTCAATATGAAGAACCAAGTTACAAAGATAGGTTCCCAACATGGGTCAAGCCAAATGATAGAAAGCTATTGCAGACAACTTCTCCAGCTTCTCAGGCTAACGTAGTGGTGGCAAAAGATGGTTCTGGAAAGTACACAACGGTGAGTGCAGCCATAAATGCCGCACCACAAAGTAGTAGCGGTAGGTATGTGATATACGTGAAAGCAGGAATATACAATGAACAAGTTGAGATAAAGGCAAAGAATATAATGTTGGTTGGAGATGGTATTGGCAACACCATAATCACAGGTAGCAAAAGTGTTGGAGGTGGCACTACAACCATCAGTTCAGCCACTGTTGGTGTTGTTGGAGATGGATTTATGGCTCAAGATATGACATTCAGGAACACTGCTGGTGCAGCAAATCACCAAGCTGTTGCATTACGTTCTGGTTCTGATTTATCAGTATTTTACAGATGTAGCTTTGAAGGTTACCAAGACACATTGTTTGTGCTTTCTAATAGACAATTCTATAGGGAATGTGACATTTATGGCACTGTTGACTTTATCTTTGGTAATGCTGCTGTGGTGTTACAAAATTGCAACATTTTTGCCCGATATCCTCCTTACAGAATCAATACAATCACTGCCCAAGGAAGAACTGATCCAAACCAAAACACAGGTATTTCTATTCACAATTGTAGGGTTACAGCTGCCTCAGATTTAGAACCTGTTCAAAGCTCTGTTAGGACTTATCTTGGAAGACCTTGGCAACAATACTCTCAAACAATTTTCATGAAGACATATCTTGATAGTTTGATTAATCCAGCAGGTTGGTTGGAATGGAATGGTAACTTTGCATTAAGCACTCTACATTATGGAGAGTACATGAACACAGGTCCTGGTTCTTCCACTATAAGTCGAGTTAACTGGTTAGGTTATCATGTCATTACCGATGCTTCAGATGCATCAAGATTCACTGTTGCAAACTTCATAGCTGGCAACTCATGGTTACCAGCCACTAGTGTGCCTTTCACCTCTACTCTATAA 1548 0.4154 MTTFRLLLTLLVPFLFSTFVCGYSLNDVKLWCSQTPNPQPCEYFLSNNPTHQHIPIKDKEDFFKLSLQLAQEQALKGHANTLSLGSKCRNKLETAAWADCLELYEQTIQRLNKTLDPNTKCSRVDAQTWLSTALTNLETCKAGFYDLGVQDYVLPLMSNNVTKLLSNTLALNKVQYEEPSYKDRFPTWVKPNDRKLLQTTSPASQANVVVAKDGSGKYTTVSAAINAAPQSSSGRYVIYVKAGIYNEQVEIKAKNIMLVGDGIGNTIITGSKSVGGGTTTISSATVGVVGDGFMAQDMTFRNTAGAANHQAVALRSGSDLSVFYRCSFEGYQDTLFVLSNRQFYRECDIYGTVDFIFGNAAVVLQNCNIFARYPPYRINTITAQGRTDPNQNTGISIHNCRVTAASDLEPVQSSVRTYLGRPWQQYSQTIFMKTYLDSLINPAGWLEWNGNFALSTLHYGEYMNTGPGSSTISRVNWLGYHVITDASDASRFTVANFIAGNSWLPATSVPFTSTL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2342g00010 515 Gene3D - 202 515 IPR012334 -
Gabi2342g00010 515 SUPERFAMILY Pectin lyase-like 202 514 IPR011050 -
Gabi2342g00010 515 NCBIfam pectinesterase inhibitor domain 6 173 IPR006501 GO:0004857
Gabi2342g00010 515 Pfam Pectinesterase 207 501 IPR000070 GO:0030599|GO:0042545
Gabi2342g00010 515 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 174 IPR035513 -
Gabi2342g00010 515 SMART PMEI_2 23 171 IPR006501 GO:0004857
Gabi2342g00010 515 SMART complete 240 418 IPR006633 -
Gabi2342g00010 515 FunFam Pectinesterase 201 515 - -
Gabi2342g00010 515 FunFam Pectinesterase 23 174 - -
Gabi2342g00010 515 ProSitePatterns Pectinesterase signature 2. 349 358 IPR033131 -
Gabi2342g00010 515 CDD PMEI-like_3 30 173 - -
Gabi2342g00010 515 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
Gabi2342g00010 515 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 174 IPR035513 -
Gabi2342g00010 515 Pfam Plant invertase/pectin methylesterase inhibitor 28 171 IPR006501 GO:0004857
Gabi2342g00010 515 PANTHER PECTINESTERASE 15 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2342g00010 Gabi-Chr2342 75519 77755 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2342g00010 1 515 Carbohydrate Esterase AT2G45220 64.865 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2342g00010 K01051 - gmx:100781697 858.211