Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2342g00006 ATGGCCACCACCACCTTTTGCCTCCAAGAAATGGAGGTGCTCCAAATGGTCCAAACCCAGGTTTCACATGCCAAGAATTGGGTTGGGAACTCTGTCAGTTTGCTTGGCTTGGCTGATCAAAGCCTAAGCCTTTCAGATCAAACAAGTGTGGCGCTAAGTGATTGTGCCAAGCTCTATGAGGAGTGTGAGTCTCGGTTGGCTCACATGATGTCTAACAAGAGTACTTACACCAAAGAAGATGCACTTACTTGGGTAAGTGCTGTGATGACAAATCACAAGACTTGTTTAGATGGATTGCAGGAAAAAGGTTATGTTGAAAGTCATGTTTTGGGTAGAAACTTGACCATGTTGCTTGGGAAAGCTCTTGTTTTGTATTCAAACAACAAAGGCAAAGGAAAAGGACCACCACTTAGAACAGTATCCAAATCAAATGAAGGTCTTTTAGAATCATGGAATTCAGAAACGGGTAAGGCAGATTTCACAGTGGCACAAGATGGTTCAGGCACACACAAAACAATCAGAGAAGCAGTAGAAGCACTAGCTGCAATGGATCAAAACCGTCCTGAAAGAGCAGTTGTTTATGTAAAATCAGGAATCTACAATGAAAAGGTGGAGGTTGGAAACAAGTTGCACAGTGTGATGTTTGTAGGAGATGGCATAGACAAAACTATCATCACTGGCAACAGAAATGTTGTTCAGGGTTCCACCACTCTGAGCTCAGCCACATTTGATGTATCTGGTGATGGGTTTTGGGCAAAAGATATGACATTTGAGAACACTGCAGGCCCTGAAAGGCATCAAGCAGTGGCACTTAAGGTAAGTTCAGACCTATCAATCTTCTACAGGTGCAGCTTCAGAGGATACCAAGACACACTTTATGTGCATTCAAATCGCCAATTCTACAGAGATTGTCACATATATGGGACCATAGATTTCATATTTGGTGATGCCACGGTAGTGTTACAAAACTGTGACATCTATATAAGGAAACCAATGAGTCATCAATCTAACTTCATCACAGCACAAGGAAGAGATGATCCTAATAAACCAACTGGGATTTCAATCCAGAGTTGCAGGGTTAGGCCTGCATCAGAATTTGTCATGTCAAAGGATTCTTTCAGTACCTTCTTAGGAAGGCCTTGGAAAAAGTACTCAAGGACTGTGTTCATGAAAAGTGACTTAGATGGGTTGATTAACCCAAGAGGGTGGGGTGAATGGGAAGGAGATTTTGCAATTTCAACTTTGTACTATGGTGAGTATATGAATTATGGAAGTGGTGCCTCTACACAGGATAGGGTGCATTGGCCTGGTTTTCATGTGTTGAGTAGTGCCAATGAGGCTAGTCCCTTCACAGTGAGTCAATTTTTGCAAGGAGAAAGGTGGATTTCTGCTACAGGGGTGCCATTCTTGTCTGGAATTTAA 1422 0.4248 MATTTFCLQEMEVLQMVQTQVSHAKNWVGNSVSLLGLADQSLSLSDQTSVALSDCAKLYEECESRLAHMMSNKSTYTKEDALTWVSAVMTNHKTCLDGLQEKGYVESHVLGRNLTMLLGKALVLYSNNKGKGKGPPLRTVSKSNEGLLESWNSETGKADFTVAQDGSGTHKTIREAVEALAAMDQNRPERAVVYVKSGIYNEKVEVGNKLHSVMFVGDGIDKTIITGNRNVVQGSTTLSSATFDVSGDGFWAKDMTFENTAGPERHQAVALKVSSDLSIFYRCSFRGYQDTLYVHSNRQFYRDCHIYGTIDFIFGDATVVLQNCDIYIRKPMSHQSNFITAQGRDDPNKPTGISIQSCRVRPASEFVMSKDSFSTFLGRPWKKYSRTVFMKSDLDGLINPRGWGEWEGDFAISTLYYGEYMNYGSGASTQDRVHWPGFHVLSSANEASPFTVSQFLQGERWISATGVPFLSGI 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2342g00006 473 ProSitePatterns Pectinesterase signature 2. 306 315 IPR033131 -
Gabi2342g00006 473 Gene3D - 153 473 IPR012334 -
Gabi2342g00006 473 Pfam Pectinesterase 159 459 IPR000070 GO:0030599|GO:0042545
Gabi2342g00006 473 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 19 116 IPR035513 -
Gabi2342g00006 473 PANTHER PECTINESTERASE 31 463 - -
Gabi2342g00006 473 SUPERFAMILY Pectin lyase-like 157 472 IPR011050 -
Gabi2342g00006 473 FunFam Pectinesterase 153 473 - -
Gabi2342g00006 473 Pfam Plant invertase/pectin methylesterase inhibitor 31 115 IPR006501 GO:0004857
Gabi2342g00006 473 CDD PMEI-like_4 11 126 - -
Gabi2342g00006 473 Gene3D Invertase/pectin methylesterase inhibitor family protein 10 127 IPR035513 -
Gabi2342g00006 473 SMART PMEI_2 12 124 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2342g00006 Gabi-Chr2342 36976 39517 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2342g00006 10 473 Carbohydrate Esterase AT3G60730 52.695 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2342g00006 K01051 - gmx:100792852 771.155