Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2342g00003 ATGAGAATCAATCCGACTACCTCTGGTCCTGAAGTTTCTGCGCTTGAAAAAAAAAATCAGGGACGTATCTCCCAAATAATTGGGCCGGTACTAGATGTAGCTTTTCCCCCGGGGAAGATGCCTAATATTTACAACGCTCTTGTAGTTAAGGGTCAAGATACTGTTGGTCAACAAATTAACGTGACTTGTGAAGTACAGCAATTATTGGGAAATAATCGAGTGAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAATGAGAGGAATGGAAGTGATTGACACGGGAGCTCCTCTAAGTGTTCCGGTCGGTGGAACAACTCTTGGACGAATTTTCAATGTACTTGGAGAGCCTATTGATAATTTAGGTCCTGTAGATACTCGCACAACATCTCCTATTCATAGATCTGCGCCCGCCTTTATACAGTTAGATACAAAATTATCCATTTTTGAAACAGGAATTAAAGTAGTAGATCTTTTAGCTCCTTATCGTCGTGGAGGAAAAATAGGACTTTTCGGTGGAGCTGGAGTGGGTAAAACAGTACTTATTATGGAATTGATCAATAACATTGCCAAAGCTCATGGAGGTGTATCTGTATTTGGTGGGGTTGGTGAGCGGACTCGTGAGGGTGCGGAATCCAAAGTAGCTCTCGTATATGGTCAAATGAATGAACCACCCGGAGCTCGTATGAGAGTTGGTTTAACTGCCCTAACTATGGCGGAATATTTTCGCGATGTCAATGAACAAGATGTACTTCTATTTATCGACAATATCTTCCGCTTCGTAATGTTGACTTTCATTCCAGAATGGCACAATCTTTAA 819 0.4176 MRINPTTSGPEVSALEKKNQGRISQIIGPVLDVAFPPGKMPNIYNALVVKGQDTVGQQINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGTTLGRIFNVLGEPIDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVMLTFIPEWHNL 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2342g00003 272 Gene3D - 98 264 IPR027417 -
Gabi2342g00003 272 Pfam ATP synthase alpha/beta family, beta-barrel domain 23 95 IPR004100 GO:0046034|GO:1902600
Gabi2342g00003 272 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 19 97 IPR036121 GO:0046034|GO:1902600
Gabi2342g00003 272 FunFam ATP synthase subunit beta, chloroplastic 18 97 - -
Gabi2342g00003 272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 262 IPR027417 -
Gabi2342g00003 272 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 152 262 IPR000194 GO:0005524
Gabi2342g00003 272 Gene3D - 18 97 - -
Gabi2342g00003 272 PANTHER ATP SYNTHASE 16 262 - -
Gabi2342g00003 272 CDD ATP-synt_F1_beta_N 19 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2342g00003 Gabi-Chr2342 23968 25246 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2342g00003 94 260 Primary Pumps ATPases(2) AT1G20260 26.238 1.16e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2342g00003 K02112 - ming:20832704 490.73