Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi233g00007 ATGTCATCGGAGGCGAGAAGCAAGGGCTGCACTATTGAAGAGGGCAAGCACTACCCTCCACCATTTGCCTCTCATGAGGACGTGGTTAACCATCCTTCTGTCTTCTGGGACACACTCAGGCGTTTTCACACTGTTATGGGTACCAAATTTATGATTCCTGTGATTGGAGGGAAGGAGCTGGATTTGCACGTTCTTTACGTGGAGGTTACGAGGAGAAGTGGCTATGAGAAGGTGGTTGCAGAGAAGAAATGGAGGGAAGTAGGTAGTGTATTCAAGTTCTCCCCAACAACCACAAGTGCTTCTTTTGTACTGAGGAAACACTACTTCAGTCTTCTTTACCATTTCGAACAAGTCCACTTCTTTAGAGTTCGGGGTCCTTTGTACACTCCTTCAGATGCATTTTCTGGCAACAGCCAGTCGTGGAGACCTGAATTAGCTATGGTGGCATATTCACCTAAGGGGATAAACATTGAATCCCATGCTGAAGATACTTCATGTCTTTTGGGAGATGGAACGATAGAAGGAAAATTTGATTGTGGTTACTTGGTGTCTGTGAAACTGGGTTCTGAGGTTCTTAAAGGAGTGCTTTACCATCCAGAGCAATCTGCTCCTCTTCCATCGGTTCTGCAATATGACAATGCCATTGTACCATTCAATGGCAAACCCGGTCGATTTGGTAGGAGGAGGAGAAACAAAAGAAAGTGGGACCCCAACTACCCAAAACCAAATAGGAGTGGTTATAATTTTTTCTTTGCTGAAAAGCATTACAAGCTCAAATCCCTCTACCCAAACAGAGAAAGGGAGTTTACCAAAATGATTGGCCAGTCATGGAATAGTCTGAGTCCTGAGGAAAGAATGGTTTACCAGAACATTGGCTTAATAGACAAAGAAAGGTACAAGAGAGAATTAACGGAGTACAAAGAGAAAATGAAGCCTGGGTATACCGCATAG 951 0.4406 MSSEARSKGCTIEEGKHYPPPFASHEDVVNHPSVFWDTLRRFHTVMGTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYFSLLYHFEQVHFFRVRGPLYTPSDAFSGNSQSWRPELAMVAYSPKGINIESHAEDTSCLLGDGTIEGKFDCGYLVSVKLGSEVLKGVLYHPEQSAPLPSVLQYDNAIVPFNGKPGRFGRRRRNKRKWDPNYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGQSWNSLSPEERMVYQNIGLIDKERYKRELTEYKEKMKPGYTA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi233g00007 316 SUPERFAMILY HMG-box 237 310 IPR036910 -
Gabi233g00007 316 Gene3D High mobility group box domain 225 315 IPR036910 -
Gabi233g00007 316 CDD HMG-box_AtHMGB9-like 240 306 - -
Gabi233g00007 316 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Gabi233g00007 316 SMART hmgende2 239 308 IPR009071 -
Gabi233g00007 316 SUPERFAMILY ARID-like 26 125 IPR036431 GO:0003677
Gabi233g00007 316 CDD ARID_HMGB9-like 32 116 IPR045303 GO:0003677
Gabi233g00007 316 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 240 307 IPR009071 -
Gabi233g00007 316 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 14 311 - -
Gabi233g00007 316 SMART ARID_2 26 116 - -
Gabi233g00007 316 SMART bright_3 30 121 IPR001606 GO:0003677
Gabi233g00007 316 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Gabi233g00007 316 Gene3D - 24 124 IPR036431 GO:0003677
Gabi233g00007 316 Pfam HMG (high mobility group) box 240 307 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi233g00007 Gabi-Chr233 106150 109115 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi233g00007 16 311 ARID Transcription Factor Family AT1G76110 65.677 8.90e-134 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gabi233g00007 ARID 1.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi233g00007 - - gmx:100784746 509.22