Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi233g00006 ATGGGAGACACAGAGAGTTGCAGTAGTAGAGTTTTCGATTCTGGTTGGAATCAAAATAGAAAGCAGATGCAGAAGGTTGAAATTTACAACCAGGTTCTTTGTCGACTTAGGGAATTGAATGTCCCAGAGGCAGTGATTCCTGGTTTTGAGGATGAGCTTTGGGCGCACTTCTATCGCCTTCCCACTAGGTATGCGTTGGATATGAATGTAGAGAGGGCCCAAGATGTTCTTGTGCATAAAAGGCTACTGCACATAGCACGAGCCACTGCAACTGGAACCGGACCTGCAGTTGAAGTCCGTCTTGTGCAGGTTTGTTCTGCTTCTGGTGCGCGTTGCAGTAAATCCCTTCATTCAAACTCGCAAAGTAAAGTCAGTCCTCAAGATTCTGATATTCCAGACAACATGAGGCATGATTATTGCTTGAAACTTTTGTTTCTGTTTATCACATTTCATCCTACGACTTACGGCAGGCCAATGCATGAAATCACAATTTCAACAAATGACAAGCCAAAACTTCTGAGTCAGTTGACTTCCTTACTGTCTGAGACTGGGCTGGACATTCAGGAAGCACATGCTTTTTCGACAATGGATGGCTATTCATTGGATGTCTTTGTTGTTGGTGGTTGGGCAGTTGAGGAGACAGAGAAGTTAAAATATGTACTGGCAAAGAAAATTCAGAAACTCGAGAATCAGCCTCAGTTGAAAGAAAATGGCAGTCTCCCTACTGCAGAGCAAGAGCAAACCATGATGAACTTCATATCTGGACATGTAAATTTGCCCACTTGTGGAAATGATGTCTGGAAAATTGATGCAAGGTGTTTGAGATATGAAAAGAAAATTGCATCTGGATCTTTCAGTGATTTGTATAAAGGTACGTTTTGTAATCAAGATGTAGCTATCAAAGTCCTTAAGGGTGAGAATTTGAATGAAAATATACAGAAGGAGTTTGCTCAGGAAGTCTATATCCTAAGTAAAATTCAGCACAAGAATGTTGTCAAATTTGTTGGCGCTTGTACGAATCCCCCAAACTTTTACCTTGTCACAGAATATTTGTCTGGTGGAAGTATGTACCACTTTCTGCGTATGCAGAAGACCGTCCTTGCTCTTCCATCTTTGCTCAATATAGCCATTGATGTTTCCGAAGGAATGAAATATTTGCATGAGAATGATATCATACATCGAGACCTCAAAGCTGCTAATCTTTTGATAGATGAGAATGGGGTAGTTAAGATTGCCGATTTTGGTGTGTCGAGAGTGCACGATCAGTCTGGTATCATGACTGCAGAAACTGGAACTTATCGGTGGATGGCTCCTGAGGTTATTGAACATAAACCATATGATTACAAAGCCGATGTCTTTAGCTTTGCCATTGTTCTTTGGGAGCTGCTTACGGGAAAGCTTCCTTATGAGCGTTTGTCCCCATTGCAAGCAGCTGTTGGAGTGGTTCAGAAGGGTTTAAGGCCAAAGATTCCAAAGCATACTCATCCAAAGTTAGTAGAATTGCTTCACAGGTGCTGGCACCAAGATCCATCTTTCAGACCCAATTTCTCAGAAATTCTGGAATTTCTGCTGCACGTGACCAAAACGGTTAATGGGGAATGTGAAGACGAAGGGAATGAATGTTAA 1626 0.4188 MGDTESCSSRVFDSGWNQNRKQMQKVEIYNQVLCRLRELNVPEAVIPGFEDELWAHFYRLPTRYALDMNVERAQDVLVHKRLLHIARATATGTGPAVEVRLVQVCSASGARCSKSLHSNSQSKVSPQDSDIPDNMRHDYCLKLLFLFITFHPTTYGRPMHEITISTNDKPKLLSQLTSLLSETGLDIQEAHAFSTMDGYSLDVFVVGGWAVEETEKLKYVLAKKIQKLENQPQLKENGSLPTAEQEQTMMNFISGHVNLPTCGNDVWKIDARCLRYEKKIASGSFSDLYKGTFCNQDVAIKVLKGENLNENIQKEFAQEVYILSKIQHKNVVKFVGACTNPPNFYLVTEYLSGGSMYHFLRMQKTVLALPSLLNIAIDVSEGMKYLHENDIIHRDLKAANLLIDENGVVKIADFGVSRVHDQSGIMTAETGTYRWMAPEVIEHKPYDYKADVFSFAIVLWELLTGKLPYERLSPLQAAVGVVQKGLRPKIPKHTHPKLVELLHRCWHQDPSFRPNFSEILEFLLHVTKTVNGECEDEGNEC 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi233g00006 541 SUPERFAMILY Protein kinase-like (PK-like) 248 523 IPR011009 -
Gabi233g00006 541 ProSiteProfiles ACT domain profile. 161 241 IPR002912 -
Gabi233g00006 541 FunFam Serine/threonine-protein kinase isoform 1 264 352 - -
Gabi233g00006 541 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 114 523 - -
Gabi233g00006 541 Gene3D Phosphorylase Kinase; domain 1 268 352 - -
Gabi233g00006 541 SUPERFAMILY ACT-like 159 229 IPR045865 -
Gabi233g00006 541 ProSiteProfiles Protein kinase domain profile. 274 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi233g00006 541 Pfam Protein tyrosine and serine/threonine kinase 275 523 IPR001245 GO:0004672|GO:0006468
Gabi233g00006 541 Coils Coil 211 231 - -
Gabi233g00006 541 CDD STKc_MAP3K-like 280 523 - -
Gabi233g00006 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 391 403 IPR008271 GO:0004672|GO:0006468
Gabi233g00006 541 SMART serkin_6 274 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi233g00006 541 PRINTS Tyrosine kinase catalytic domain signature 450 472 IPR001245 GO:0004672|GO:0006468
Gabi233g00006 541 PRINTS Tyrosine kinase catalytic domain signature 431 441 IPR001245 GO:0004672|GO:0006468
Gabi233g00006 541 PRINTS Tyrosine kinase catalytic domain signature 494 516 IPR001245 GO:0004672|GO:0006468
Gabi233g00006 541 PRINTS Tyrosine kinase catalytic domain signature 385 403 IPR001245 GO:0004672|GO:0006468
Gabi233g00006 541 PRINTS Tyrosine kinase catalytic domain signature 348 361 IPR001245 GO:0004672|GO:0006468
Gabi233g00006 541 Gene3D Transferase(Phosphotransferase) domain 1 353 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi233g00006 Gabi-Chr233 84682 94737 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi233g00006 5 533 MAP Kinase Kinase Kinase AT4G35780 53.654 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gabi233g00006 PK_Tyr_Ser-Thr 6.9e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi233g00006 - - gmx:100818047 806.979