Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2333g00024 ATGGAGCCCATTTGCCCTATTTACTCTGGGTGTGCCACTGAAATCTCTGCACTTCTCACTCCTCCCTCACCTCTTCAAGTTCAGGAATATTATCATAACCTTTTGTCTGCAAGGCAGTGCACTGGTATCACAGTCAAACATGATGGGAACTTTGGAAAGGGTGTATATGCTGCCATGGACTTCAAAGAGGGGGAACTTGTTCTGAAGGATCACATGTTTGTGGGGTCTCAACACTCTTTCAACAAGATTGATTGTTTTGTCTGTAGCTTCTGCTTTCGTTTTATTGGTTCCATAGAACTTCAAATTGGAAGGAGGCTTTACTTGCAACAATTAAGGGCTAATGACAGTCATGGTTGTGATGTGGGAAACTTTTTGGAACCTTCCAAAAACTGCCATGAAATGGATTCATCTGATGAAGAGGAGAGCACTCAGCAATGTGCTTCTGGTAGTTCCAAAACTAGAGTTCCTCTCCCTGAAGGTGTTGTGGAATCATTAATGAATGGCCAATTGAGATTGCCTTGCTCTGAGGAGTTCTCCTTGCCGCCTGCTGTTCCATGCCCTGGTGGATGTGGAGAAGCTTATTATTGCAGCACGTCGTGCGCAGAGGCTGATTGGGAATCCTCCCATTCTTTACTCTGTACTGGCGAGAGTTCTGATCTGGAACATAGGGAGGCACTCCTTAAATTCATCAAACATGCTAATGAAACAAATGATATATTCCTCCTTGCTGCAAAAGCTATTTCTTCTACCATATTAAGGTACCACAAGTTGAAAGCAAACCATCTTGAAGAGCAAGTGAAATGTGATACATCCTGTGTTTCAAACCACCGTAATTTCTCTCTTCTTCAGGAAGCTTGGAGGCCTATATCAATGGGACACAAGAGAAGGTGGTGGGAATGCATTGCATTGCCAGATGATATTGATCCTTCTGATGAAGCTACGTTTAGGAAACAAATAAAAGAGTTGGCATTTGAGTCTCTCCAACATCTTAAGACAGCTATATTTGACAAGGAATGTGAGCCATTATTCTCCCTCGAAATCTATGGACATATCATCGGCATGTATGAGCTGAATAATCTTGATTTGGTTGTAGCTTCTCCTGTGGAGGATTACTTTTTATACATTGATGATCTGACATATCCTAATAAGGAAGAAGCTATGAAAATTACACAACCAATTCTGGATGCTCTTGATGAAGACTATTCTATTTGTTGCCAAGGAACTGCGTTTTTTCCTTTGCAAAGCTGCATGAACCATTCCTGTTGTCCCAATGCCAAAGCTTTCAAAAGAGATGAGGATAGAGATGGCCAAGCAACAATAATTGCACTGAGGTCCATATGTAAAGGAGAAGAGATAACAATCTCATATGTTGACGAGGACCTTCCATTTGAAGAGAGACAAGCATCCCTTGCAGATTATGGTTTTAGATGCAGCTGTCCAAAGTGCATTAAAGAAGAGCCATGA 1464 0.4173 MEPICPIYSGCATEISALLTPPSPLQVQEYYHNLLSARQCTGITVKHDGNFGKGVYAAMDFKEGELVLKDHMFVGSQHSFNKIDCFVCSFCFRFIGSIELQIGRRLYLQQLRANDSHGCDVGNFLEPSKNCHEMDSSDEEESTQQCASGSSKTRVPLPEGVVESLMNGQLRLPCSEEFSLPPAVPCPGGCGEAYYCSTSCAEADWESSHSLLCTGESSDLEHREALLKFIKHANETNDIFLLAAKAISSTILRYHKLKANHLEEQVKCDTSCVSNHRNFSLLQEAWRPISMGHKRRWWECIALPDDIDPSDEATFRKQIKELAFESLQHLKTAIFDKECEPLFSLEIYGHIIGMYELNNLDLVVASPVEDYFLYIDDLTYPNKEEAMKITQPILDALDEDYSICCQGTAFFPLQSCMNHSCCPNAKAFKRDEDRDGQATIIALRSICKGEEITISYVDEDLPFEERQASLADYGFRCSCPKCIKEEP 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2333g00024 487 MobiDBLite consensus disorder prediction 130 155 - -
Gabi2333g00024 487 SUPERFAMILY SET domain 42 480 IPR046341 -
Gabi2333g00024 487 Gene3D - 128 218 - -
Gabi2333g00024 487 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 14 486 IPR044237 GO:0008168
Gabi2333g00024 487 ProSiteProfiles SET domain profile. 41 457 IPR001214 GO:0005515
Gabi2333g00024 487 SUPERFAMILY HIT/MYND zinc finger-like 182 214 - -
Gabi2333g00024 487 CDD SET_SMYD 396 482 - -
Gabi2333g00024 487 Pfam SET domain 52 456 IPR001214 GO:0005515
Gabi2333g00024 487 Pfam MYND finger 185 213 IPR002893 -
Gabi2333g00024 487 Gene3D SET domain 379 486 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2333g00024 Gabi-Chr2333 233281 239461 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi2333g00024 SET 3.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2333g00024 - - gmx:100803651 838.95