Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2333g00023 ATGGAGCCCATTTGCCCTATTTACTCTGGGTGTGCCACTGAAATCTCTGCACTTCTCACTCCTCCCTCACCTCTTCAAGTTCAGGAATATTATCATAACCTTTTGTCTGCAAGGCAGTGCACTGGTATCACAGTCAAACATGATGGGAACTTTGGAAAGGGTGTATATGCTGCCATGGACTTCAAAGAGGGGGAACTTGTTCTGAAGGATCACATGTTTGTGGGGTCTCAACACTCTTTCAACAAGATTGATTGTTTTGTCTGTAGCTTCTGCTTTCGTTTTATTGGTTCCATAGAACTTCAAATTGGAAGGAGGCTTTACTTGCAACAATTAAGGGCTAATGACAGTCATGGTTGTGATGTGGGAAACTTTTTGGAACCTTCCAAAAACTGCCATGAAATGGATTCATCTGATGAAGAGGAGAGCACTCAGCAATGTGCTTCTGGTAGTTCCAAAACTAGAGTTCCTCTCCCTGAAGGTGTTGTGGAATCATTAATGAATGGCCAATTGAGATTGCCTTGCTCTGAGGAGTTCTCCTTGCCGCCTGCTGTTCCATGCCCTGGTGGATGTGGAGAAGCTTATTATTGCAGCACGTCGTGCGCAGAGGCTGATTGGGAATCCTCCCATTCTTTACTCTGTACTGGCGAGAGTTCTGATCTGGAACATAGGGAGGCACTCCTTAAATTCATCAAACATGCTAATGAAACAAATGATATATTCCTCCTTGCTGCAAAAGCTATTTCTTCTACCATATTAAGGTACCACAAGTTGAAAGCAAACCATCTTGAAGAGCAAGTGAAATGTGATACATCCTGTGTTTCAAACCACCGTAATTTCTCTCTTCTTCAGGAAGCTTGGAGGCCTATATCAATGGGACACAAGAGAAGGTGGTGGGAATGCATTGCATTGCCAGATGATATTGATCCTTCTGATGAAGCTACGTTTAGGAAACAAATAAAAGAGTTGGCATTTGAGTCTCTCCAACATCTTAAGACAGCTATATTTGACAAGGAATTATTCTCCCTCGAAATCTATGGACATATCATCGGCATGTATGAGCTGAATAATCTTGATTTGGTTGTAGCTTCTCCTGTGGAGGATTACTTTTTATACATTGATGATCTGACATATCCTAATAAGGAAGAAGCTATGAAAATTACACAACCAATTCTGGATGCTCTTGATGAAGACTATTCTATTTGTTGCCAAGGAACTGCGTTTTTTCCTTTGCAAAGCTGCATGAACCATTCCTGTTGTCCCAATGCCAAAGCTTTCAAAAGAGATGAGGATAGAGATGGCCAAGCAACAATAATTGCACTGAGGTCCATATGTAAAGGAGAAGAGATAACAATCTCATATGTTGACGAGGACCTTCCATTTGAAGAGAGACAAGCATCCCTTGCAGATTATGGTTTTAGATGCAGCTGTCCAAAGTGCATTAAAGAAGAGCCATGA 1455 0.4165 MEPICPIYSGCATEISALLTPPSPLQVQEYYHNLLSARQCTGITVKHDGNFGKGVYAAMDFKEGELVLKDHMFVGSQHSFNKIDCFVCSFCFRFIGSIELQIGRRLYLQQLRANDSHGCDVGNFLEPSKNCHEMDSSDEEESTQQCASGSSKTRVPLPEGVVESLMNGQLRLPCSEEFSLPPAVPCPGGCGEAYYCSTSCAEADWESSHSLLCTGESSDLEHREALLKFIKHANETNDIFLLAAKAISSTILRYHKLKANHLEEQVKCDTSCVSNHRNFSLLQEAWRPISMGHKRRWWECIALPDDIDPSDEATFRKQIKELAFESLQHLKTAIFDKELFSLEIYGHIIGMYELNNLDLVVASPVEDYFLYIDDLTYPNKEEAMKITQPILDALDEDYSICCQGTAFFPLQSCMNHSCCPNAKAFKRDEDRDGQATIIALRSICKGEEITISYVDEDLPFEERQASLADYGFRCSCPKCIKEEP 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2333g00023 484 SUPERFAMILY SET domain 42 477 IPR046341 -
Gabi2333g00023 484 CDD SET_SMYD 393 479 - -
Gabi2333g00023 484 MobiDBLite consensus disorder prediction 130 155 - -
Gabi2333g00023 484 Gene3D - 128 218 - -
Gabi2333g00023 484 Pfam SET domain 52 453 IPR001214 GO:0005515
Gabi2333g00023 484 SUPERFAMILY HIT/MYND zinc finger-like 182 214 - -
Gabi2333g00023 484 Gene3D SET domain 376 483 IPR046341 -
Gabi2333g00023 484 ProSiteProfiles SET domain profile. 41 454 IPR001214 GO:0005515
Gabi2333g00023 484 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 14 483 IPR044237 GO:0008168
Gabi2333g00023 484 Pfam MYND finger 185 213 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2333g00023 Gabi-Chr2333 233281 239461 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi2333g00023 SET 6.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2333g00023 - - gmx:100803651 825.469