Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2333g00021 ATGAGAGTTGTTATTGTCACAAGAACAAACCAATTTTTCATTGAAGTAGGTACTCAAGAAACAGTAGTTGAAATCAAAAGAAAAATAGAACAAATCCATGATGTTCCAGTGGCTTCACAAATCCTAACAGTTTCAGGGTGGGAACTAGTGGATGGATTAGACATGGAAGATTATCCAATAGTCACTGAAGGTACAAAAGTGTACCTCACCATCAAACTAGTGGAGTCACATACTAATCATCCTAACAAAATGCAAATCACAGTAAAATTTTCAGCTAGACAGATTAACATAGAGGTGGACAGAACAGATACTGTTCGTAGCTTGAAGGAAAAGATTCATATTATTGATAGCACACCCATCAAAAGAATGACACTTTTCTTTTTAGGGAAAGAATTGGATGAAGATTTTCGAAATCTGAATGAGTATGGCATACGTGAATTCTCAGAAATTGTTGTGTTTCTTAAGACAATGAATCGGTCAAGAGATGATCCTCCTGCAAGGAAGTTAAGCTTAGTGGTACAAACTTCCTCTAGTTTGCTTAATGCAGCCACTATTCCATTGGAGATGAGAGATGCAAGCACTGTCAATGAGTTGAAGCAGTTACTGCTAAGCAGAAAAATTCTACCAGTTGATGACTATTTGTTTGTACACAGGCAGAGGATCATGCGTGATAGTTGTAGCCTCAGGTGGCACGGAGTTGAAAATGGTGACGGTCTCTATGTGTTTAAAGGTACAGTTAGTCGTAGTGGTGGGCATGCATGA 762 0.3832 MRVVIVTRTNQFFIEVGTQETVVEIKRKIEQIHDVPVASQILTVSGWELVDGLDMEDYPIVTEGTKVYLTIKLVESHTNHPNKMQITVKFSARQINIEVDRTDTVRSLKEKIHIIDSTPIKRMTLFFLGKELDEDFRNLNEYGIREFSEIVVFLKTMNRSRDDPPARKLSLVVQTSSSLLNAATIPLEMRDASTVNELKQLLLSRKILPVDDYLFVHRQRIMRDSCSLRWHGVENGDGLYVFKGTVSRSGGHA 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2333g00021 253 SUPERFAMILY Ubiquitin-like 180 242 IPR029071 -
Gabi2333g00021 253 Gene3D - 83 155 - -
Gabi2333g00021 253 ProSiteProfiles Ubiquitin domain profile. 84 159 IPR000626 GO:0005515
Gabi2333g00021 253 CDD Ubl_ubiquitin_like 3 69 - -
Gabi2333g00021 253 ProSiteProfiles Ubiquitin domain profile. 169 241 IPR000626 GO:0005515
Gabi2333g00021 253 ProSiteProfiles Ubiquitin domain profile. 1 60 IPR000626 GO:0005515
Gabi2333g00021 253 PANTHER UV EXCISION REPAIR PROTEIN RAD23 84 156 - -
Gabi2333g00021 253 Pfam Ubiquitin family 86 156 IPR000626 GO:0005515
Gabi2333g00021 253 Pfam Ubiquitin family 7 72 IPR000626 GO:0005515
Gabi2333g00021 253 Gene3D - 168 243 - -
Gabi2333g00021 253 CDD Ubl_ubiquitin_like 86 153 - -
Gabi2333g00021 253 Gene3D - 1 69 - -
Gabi2333g00021 253 SMART ubq_7 1 72 IPR000626 GO:0005515
Gabi2333g00021 253 SMART ubq_7 169 244 IPR000626 GO:0005515
Gabi2333g00021 253 SMART ubq_7 84 155 IPR000626 GO:0005515
Gabi2333g00021 253 SUPERFAMILY Ubiquitin-like 78 164 IPR029071 -
Gabi2333g00021 253 SUPERFAMILY Ubiquitin-like 1 75 IPR029071 -
Gabi2333g00021 253 CDD Ubl_ubiquitin_like 184 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2333g00021 Gabi-Chr2333 212844 213605 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2333g00021 84 155 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.986 3.03e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2333g00021 - - lang:109342690 420.239