Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2333g00016 ATGAACGACCTCCTCAGTGATTCATTTGTTAGTGAGGCCAATAATGGTCAGCCTTCTAGACAAAGTGATATTGAAATGGGAATGCATGTTCCGAGAAGCAACTCTGATATGGGAATGGAAACTTTTAATAAGCAGATCCAAGAGGCTGATAAACAAATTGATAAGCTGTCTGGGCTACTTCAAAAGCTAAAGGAAGCTAATGAGGAATCAAAATCTGTTACGAAGGCATCTGCCATGAAATCTATTAAGAAGAGGATGGAGAAAGATATTGATGAAGTTGGAAAGATAGCACATGGAGTCAAATCAAAAATAGAAGCTATAAACAAAGATAACCTAACCAATAGACAAAAGCCTGGCTGTGAGAAGGGGACAGGTATAGATAGAGCAAGGATGAATATGACAAATTCCTTGACTAAAAAGTTCAAGGATCTCATGATAGAGTTTCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAGGTTGTGGAGAGAAGAGTTATTACAGTCACGGGAACTAGGCCAGATGATGAGACAATTGATCACCTGATAGAAACTGGAAACAGTGAGCAAATCTTTCAGAAGGCGATTCTAGAAGCAGGCCGAGGACAGGTCGTAAACACCGTAGAAGAAATTCAAGAGAGACATGATGCTGTGAAAGAAATTGAGAAAAAACTTCTTGATTTACATCAGATATACCTCGACATGGCAGTCTTAGTTGATGCTCAAGGAGAAATTTTAGATAACATTGAAAGCCAGGTCAACAATGCAGTCGATCATGTCCAGAGAGGGACAACTGCACTTCAAAATGCTAAGAAACTCCAGAAGAACTCTCGAAAATGGATGTGCATTGCCATCATTATACTGTTGATAATAGTAGCTATCATAGTTGTTGGTGTTATCCAACCTTGGAAGAGTAACAAGGGTGCTTGA 933 0.3901 MNDLLSDSFVSEANNGQPSRQSDIEMGMHVPRSNSDMGMETFNKQIQEADKQIDKLSGLLQKLKEANEESKSVTKASAMKSIKKRMEKDIDEVGKIAHGVKSKIEAINKDNLTNRQKPGCEKGTGIDRARMNMTNSLTKKFKDLMIEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDHLIETGNSEQIFQKAILEAGRGQVVNTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVNNAVDHVQRGTTALQNAKKLQKNSRKWMCIAIIILLIIVAIIVVGVIQPWKSNKGA 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2333g00016 310 FunFam Syntaxin 132 34 163 - -
Gabi2333g00016 310 Pfam Syntaxin 42 244 IPR006011 GO:0016020
Gabi2333g00016 310 CDD SynN 39 196 IPR006011 GO:0016020
Gabi2333g00016 310 Pfam SNARE domain 245 297 IPR000727 -
Gabi2333g00016 310 MobiDBLite consensus disorder prediction 1 22 - -
Gabi2333g00016 310 SUPERFAMILY t-snare proteins 36 264 IPR010989 GO:0016020|GO:0016192
Gabi2333g00016 310 MobiDBLite consensus disorder prediction 1 29 - -
Gabi2333g00016 310 SMART SynN_4 34 160 IPR006011 GO:0016020
Gabi2333g00016 310 Gene3D - 202 302 - -
Gabi2333g00016 310 Gene3D - 34 163 - -
Gabi2333g00016 310 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 271 IPR000727 -
Gabi2333g00016 310 Coils Coil 39 76 - -
Gabi2333g00016 310 CDD SNARE_syntaxin1-like 208 269 - -
Gabi2333g00016 310 SMART tSNARE_6 204 271 IPR000727 -
Gabi2333g00016 310 PANTHER SYNTAXIN 38 290 IPR045242 -
Gabi2333g00016 310 FunFam Syntaxin 132 202 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2333g00016 Gabi-Chr2333 139653 143752 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2333g00016 1 310 SNARE and Associated Proteins AT3G03800 61.613 9.17e-126 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2333g00016 K08486 - gmx:100800991 531.946