Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2333g00010 ATGTTCCAGCCAAACCTAATGGAAGCTGGTCAGCTCCACCCATTGGACATGCCTCAGAACACTTCAGAGAGCGATGTCCCTAGAATCCGCGACGATGACTTTGACAGTGCCACCAAGTCCGGTAGTGAAAACCATGAAGGTGCCTCCGGCGAAGACCAAGATCCTCGCCCCAAGAAGAAGCGCTACCACCGTCACACACAGCACCAGATCCAGGAAATGGAAGCTTTCTTTAAGGAGTGTCCTCACCCTGATGACAAGCAAAGGAAGGAACTGAGCAGAGAGTTAGGGTTAGAACCATTACAGGTCAAGTTTTGGTTCCAGAACAAGCGTACTCAGATGAAGACACAACATGAGCGACATGAGAATACACAACTTAGAACCGAAAATGAGAAGCTTCGAGCTGATAACATGAGGTATAGGGAAGCTCTTAGCAACGCTTCATGTCCTAACTGTGGTGGACCAACCGCTATAGGAGAAATGTCATTTGATGAACATCACCTTAGGCTCGAAAATGCTCGACTAAGAGAAGAGATTGATAGGATTTCTGCTATTGCTGCTAAGTATGTGGGGAAGCCAGTGGTGAGTTATCCACTTCTTTCCCCTTCATCTGTTCCTCCACGTCCTTTAGAACTTGGGATTGGAAGTTTTGGTGGTCAACAAGGCATTGGTGAGGATATGTTTGGAGCTGGAGATCTTCTTAGGTCAATAACTGGACCCTCTGAAGCTGATAAACCAATAATAATAGAGCTAGCTGTTGCTGCTATGGAAGAGCTCATAGGAATGGCACAAATGGGTGAGCCTCTTTGGTTGACTACACTGGATGGAACCACCACAGTTCTCAACGAGGATGAATATATTAGGTCCTTTCCTCGAGGAATTGGTCCAAAACCTGCTGGCTTTAAGTGTGAAGCTTCACGAGAAATCGCTGTTGTTATCATGAACCATGTTAACCTTGTTGAGATTCTCATGGATGTGAACCAATGGTCCACAGTTTTCTCTGGTATCGTCTCAAGAGCAATGACATTAGAAGTGCTATCAACAGGAGTGGCGGGGAACTACAACGGTGCCTTGCAAGTGATGACGGCTGAATTACAAGTACCTTCACCTCTTGTGCCAACTCGTGAGAGTTATTTCGTAAGGTATTGTAAGCAGCACGCAGACGGAACTTGGGCAGTGGTTGATGTGTCTTTGGATAATTTGCGCCCTAGTCCTTCGGCAAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAAATGCCTAATGGCTACTCAAAGGTCATTTGGGTTGAGCATGTAGAAGTGGATGATAGAGGGGTTCATAATCTATACAAGCAGCTTGTTAGCTCTGGACAAGCATTTGGTGCAAAACGTTGGATTGCAACCTTAGATAGACAATGTGAAAGGCTTGCTAGTGCAATGGCAACAAACATTCCCACCTTAGATGTTGGAGTGATAACAAACCAAGATGGGAGGAAGAGTATGTTGAAACTGGCTGAGAGAATGGTTATAAGCTTTTGTGCTGGAGTGAGTGCTTCTACTGCTCACACATGGACAACACTATCTGGGACTGGTGCTGATGATGTAAGGGTCATGACTCGTAAGAGTATAGATGACCCTGGAAGGCCTCCTGGTATTGTTCTCAGTGCTGCAACTTCTTTTTGGCTTCCAGTGCCACCCAAAAGAGTTTTTGAATTTCTCCGTGATGAGAACTCCAGAAGTGAGTGGGATATTCTTTCCAACGGTGGAGTTATCCAAGAAATGGCACATATTGCTAATGGAAGAGATACCGGAAATTGTGTCTCTCTACTTCGGGTGAATAGTGCAAATTCAAGCCAGAGCAACATGTTGATATTACAAGAGAGTTGCACCGACTCAACGGGCTCTTTTGTTATATATGCTCCTGTTGATATTGTTGCAATGAATGTAGTTCTAAATGGAGGAGACCCAGATTATGTAGCTCTTCTTCCTTCAGGATTTGCTATACTCCCAGATGGGACCACAACACATGGTGGTGGCCTTGGTGAAACTGGTCATCATGGTGGATCTCTCTTGACTGTTGCATTTCAAATATTGGTTGATTCAGTTCCAACTGCAAAGTTGTCTCTTGGATCTGTTGCTACTGTTAATAATCTTATTGCATGCACTGTTGAGAGAATTAAGGCTTCTTTATCAGGTGAAACTACTTGA 2190 0.4466 MFQPNLMEAGQLHPLDMPQNTSESDVPRIRDDDFDSATKSGSENHEGASGEDQDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSYPLLSPSSVPPRPLELGIGSFGGQQGIGEDMFGAGDLLRSITGPSEADKPIIIELAVAAMEELIGMAQMGEPLWLTTLDGTTTVLNEDEYIRSFPRGIGPKPAGFKCEASREIAVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGQAFGAKRWIATLDRQCERLASAMATNIPTLDVGVITNQDGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLPVPPKRVFEFLRDENSRSEWDILSNGGVIQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTTHGGGLGETGHHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGETT 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2333g00010 729 CDD START_ArGLABRA2_like 244 468 - -
Gabi2333g00010 729 SMART START_1 249 469 IPR002913 GO:0008289
Gabi2333g00010 729 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 56 724 IPR042160 -
Gabi2333g00010 729 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Gabi2333g00010 729 CDD homeodomain 59 117 IPR001356 GO:0003677
Gabi2333g00010 729 MobiDBLite consensus disorder prediction 25 58 - -
Gabi2333g00010 729 Pfam Homeodomain 59 114 IPR001356 GO:0003677
Gabi2333g00010 729 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Gabi2333g00010 729 Pfam START domain 250 469 IPR002913 GO:0008289
Gabi2333g00010 729 SUPERFAMILY Bet v1-like 489 721 - -
Gabi2333g00010 729 SMART HOX_1 57 120 IPR001356 GO:0003677
Gabi2333g00010 729 ProSiteProfiles START domain profile. 240 472 IPR002913 GO:0008289
Gabi2333g00010 729 SUPERFAMILY Bet v1-like 242 471 - -
Gabi2333g00010 729 Gene3D - 302 467 IPR023393 -
Gabi2333g00010 729 Coils Coil 122 142 - -
Gabi2333g00010 729 Gene3D - 44 133 - -
Gabi2333g00010 729 MobiDBLite consensus disorder prediction 1 67 - -
Gabi2333g00010 729 FunFam Homeobox-leucine zipper protein HDG1 44 132 - -
Gabi2333g00010 729 FunFam Homeobox-leucine zipper protein GLABRA 2 249 468 - -
Gabi2333g00010 729 SUPERFAMILY Homeodomain-like 46 116 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2333g00010 Gabi-Chr2333 67399 73892 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2333g00010 1 728 Homeobox Transcription Factor Family AT1G05230 79.155 0.0 1164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi2333g00010 START 1.2e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2333g00010 K09338 - gmx:100809556 1325.84