Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2333g00006 ATGGAGGTTGTCATGTTTAAGGGTTGGACTTTGTTCCTCCTCTTGGTTTTCTGCTTGTGGATTCCTACGGAAGTGGTTGGAAGGACAGGAACTACCATTGCAAACTCTACTATTTCTTCCAGACCAAGTGTTTTGAGGATTGGAGCCTTGTTTACTTTCGATTCTGTCATTGGAAGATCGGCTAAAGCTGCAATTATGGCTGCTGTTGATGATGTTAATGCTAATACGAGCATTCTCCATGGTATTAAAATGGAAGTTATTGTACATAATACAAATTGCAGTGGGTTTCTTGGAACAGTGGAAGCTCTGCAGTTGATGGAGAATGAAGTGGTTGCTGCTATTGGTCCACAGTCTTCTGGAATAGCACATATAATTTCTCATGTGGTTAATGAACTCCATGTACCTCTTCTTTCATTTGGTGCAACAGACCCCTCTCTAACTTCTCTGCAGTACCCATATTTTGTGCGCACCACCCAGAGTGACTATTTTCAGATGTATGCAATTGCAGACTTTGTTGATTATTATAGATGGAAGGAGGTAATTGCCATTTTTGTAGATGATGATAATGGGAGGAATGGAATTTCAGTACTGGGAGATGCTCTTGCAAAGAAACGTGCCAAGATCTCTTACAAAGCTGCCTTACTTCCTAAAGCCACCAATAGTGATATCAGTGACTTGTTAAATGGTGTAAACTTAATGGAATCACGGGTCTATGTTCTGCATGTTAATCCTGATTCTGGTTTGTCAATTTTTTCTATTGCAAAGAAGCTAGGAATGATGACCAGCGGCTATGTGTGGATTGCAACAGATTGGCTTCCTTCAGTGCTGGATTCAGTAGTAGCAGTTGACACTGACACTTTGAATCTCCTACAAGGGGTTGTTGCTTTTCGCCACCACACTCCTGATACTAATCTCAAAAAGAGTTTTGTCAATAGGTTGAGGAACTCAAAAGGCAAGGAAACTGCAAGCTTCAATTCTTATGCATTATATGCATATGATTCTGTTTGGTTAGCAGCTTATGCTCTAGATGTTTTCCTCAAAGAGGGTGGAATTATATCTTTCTCTTCCGACCCTAAGTTGCATGACACAAATGGAAGCATGTTGCATTTATCATCACTTCGTGTTTTTGAAGGTGGTCCATTGTTTCTGCAGACACTTTTGAGAATGAACTTCACTGGTTTGAGTGGTCAAATTCAGTTTGATATGGAAAAGAATCTAATTCGTCCAGCATATGATATACTCAACATTGGTGGATTTGGAACCCGGAGAATTGGTTATTGGTCTAATTACTCCGGTTTATCAGTTTTAGCTCCAGAAATCTTGTATAAGAAACCTCCTAACACTTCAACAAGCAACCAACAACTGCACAATGTTATATGGCCTGGAGAAACTACAGCTACACCAAGAGGGTGGGTATTCCCCAACAATGGAAAGCCATTGCGAATAGCAGTGCCTTACCGAGTAGACTACTTGGAGTTTGTTGCTAAAGACAAGAACCCCCCTGGAGTAAAAGGCTATTGCATTGATGTCTTTGAAGCAGCCATAAACTTGTTGCCTTATGCTGTGCCACGAGAATATATATTATTTGGACATGGTGATAAAAACCCCAGCTATGACGGCCTTGTGAATCAGGTTGCACTAAATAACTTTGATGCAGCTGTAGGAGATGTTACAATTGTCCCAAACAGGACAAGGATTTTGGATTTTACTCAACCTTACATGGAGTCAGGGTTGGTGGTTGTTGTTCCTGTCAAGGAGATCAGATCAAGTCCTTGGTCTTTCCTCAAGCCATTCACCGCTCAAATGTGGTGTGTTACTGGTGCCTTTTTTCTTTTTGTGGGAACCGTTGTATGGATTCTTGAGCACCGGCACAATCCGGAGTTCCGAGGCAAGCCTACGAAACAACTTGCTACAGTCTTTTGGAGAGAACACTGTGAGTACTCTTGGGCGGTTGGTGCTAATCATATGGCTTTTTGTGGTGTTAATTATCAATTCAAGCTACACAGCTAG 2010 0.4134 MEVVMFKGWTLFLLLVFCLWIPTEVVGRTGTTIANSTISSRPSVLRIGALFTFDSVIGRSAKAAIMAAVDDVNANTSILHGIKMEVIVHNTNCSGFLGTVEALQLMENEVVAAIGPQSSGIAHIISHVVNELHVPLLSFGATDPSLTSLQYPYFVRTTQSDYFQMYAIADFVDYYRWKEVIAIFVDDDNGRNGISVLGDALAKKRAKISYKAALLPKATNSDISDLLNGVNLMESRVYVLHVNPDSGLSIFSIAKKLGMMTSGYVWIATDWLPSVLDSVVAVDTDTLNLLQGVVAFRHHTPDTNLKKSFVNRLRNSKGKETASFNSYALYAYDSVWLAAYALDVFLKEGGIISFSSDPKLHDTNGSMLHLSSLRVFEGGPLFLQTLLRMNFTGLSGQIQFDMEKNLIRPAYDILNIGGFGTRRIGYWSNYSGLSVLAPEILYKKPPNTSTSNQQLHNVIWPGETTATPRGWVFPNNGKPLRIAVPYRVDYLEFVAKDKNPPGVKGYCIDVFEAAINLLPYAVPREYILFGHGDKNPSYDGLVNQVALNNFDAAVGDVTIVPNRTRILDFTQPYMESGLVVVVPVKEIRSSPWSFLKPFTAQMWCVTGAFFLFVGTVVWILEHRHNPEFRGKPTKQLATVFWREHCEYSWAVGANHMAFCGVNYQFKLHS 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2333g00006 669 Gene3D - 591 657 - -
Gabi2333g00006 669 Gene3D - 160 433 - -
Gabi2333g00006 669 Pfam Receptor family ligand binding region 62 416 IPR001828 -
Gabi2333g00006 669 Gene3D - 475 590 - -
Gabi2333g00006 669 SMART GluR_14 481 660 IPR001320 GO:0015276|GO:0016020
Gabi2333g00006 669 CDD PBP1_GABAb_receptor_plant 46 435 IPR044440 -
Gabi2333g00006 669 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 47 642 IPR015683 -
Gabi2333g00006 669 FunFam Glutamate receptor 475 591 - -
Gabi2333g00006 669 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 58 74 - -
Gabi2333g00006 669 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 118 146 - -
Gabi2333g00006 669 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 331 343 - -
Gabi2333g00006 669 FunFam Glutamate receptor 160 327 - -
Gabi2333g00006 669 Pfam Ligated ion channel L-glutamate- and glycine-binding site 496 583 IPR019594 GO:0004970|GO:0016020
Gabi2333g00006 669 Gene3D - 63 408 - -
Gabi2333g00006 669 SUPERFAMILY Periplasmic binding protein-like II 458 608 - -
Gabi2333g00006 669 SUPERFAMILY Periplasmic binding protein-like I 40 462 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2333g00006 Gabi-Chr2333 36070 39849 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2333g00006 2 641 Ion Channels AT1G05200 64.715 0.0 881
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2333g00006 K05387 - gmx:100799912 1038.1