Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2333g00005 ATGGAGGTTGTCATGTTTAAGGGTTGGACTTTGTTCCTCCTCTTGGTTTTCTGCTTGTGGATTCCTACGGAAGTGGTTGGAAGGACAGGAACTACCATTGCAAACTCTACTATTTCTTCCAGACCAAGTGTTTTGAGGATTGGAGCCTTGTTTACTTTCGATTCTGTCATTGGAAGATCGGCTAAAGCTGCAATTATGGCTGCTGTTGATGATGTTAATGCTAATACGAGCATTCTCCATGGTATTAAAATGGAAGTTATTGTACATAATACAAATTGCAGTGGGTTTCTTGGAACAGTGGAAGCTCTGCAGTTGATGGAGAATGAAGTGGTTGCTGCTATTGGTCCACAGTCTTCTGGAATAGCACATATAATTTCTCATGTGGTTAATGAACTCCATGTACCTCTTCTTTCATTTGGTGCAACAGACCCCTCTCTAACTTCTCTGCAGTACCCATATTTTGTGCGCACCACCCAGAGTGACTATTTTCAGATGTATGCAATTGCAGACTTTGTTGATTATTATAGATGGAAGGAGGTAATTGCCATTTTTGTAGATGATGATAATGGGAGGAATGGAATTTCAGTACTGGGAGATGCTCTTGCAAAGAAACGTGCCAAGATCTCTTACAAAGCTGCCTTACTTCCTAAAGCCACCAATAGTGATATCAGTGACTTGTTAAATGGTGTAAACTTAATGGAATCACGGGTCTATGTTCTGCATGTTAATCCTGATTCTGGTTTGTCAATTTTTTCTATTGCAAAGAAGCTAGGAATGATGACCAGCGGCTATGTGTGGATTGCAACAGATTGGCTTCCTTCAGTGCTGGATTCAGTAGTAGCAGTTGACACTGACACTTTGAATCTCCTACAAGGGGTTGTTGCTTTTCGCCACCACACTCCTGATACTAATCTCAAAAAGAGTTTTGTCAATAGGTTGAGGAACTCAAAAGGCAAGGAAACTGCAAGCTTCAATTCTTATGCATTATATGCATATGATTCTGTTTGGTTAGCAGCTTATGCTCTAGATGTTTTCCTCAAAGAGGGTGGAATTATATCTTTCTCTTCCGACCCTAAGTTGCATGACACAAATGGAAGCATGTTGCATTTATCATCACTTCGTGTTTTTGAAGGTGGTCCATTGTTTCTGCAGACACTTTTGAGAATGAACTTCACTGGTTTGAGTGGTCAAATTCAGTTTGATATGGAAAAGAATCTAATTCGTCCAGCATATGATATACTCAACATTGGTGGATTTGGAACCCGGAGAATTGGTTATTGGTCTAATTACTCCGGTTTATCAGTTTTAGCTCCAGAAATCTTGTATAAGAAACCTCCTAACACTTCAACAAGCAACCAACAACTGCACAATGTTATATGGCCTGGAGAAACTACAGCTACACCAAGAGGGTGGGTATTCCCCAACAATGGAAAGCCATTGCGAATAGCAGTGCCTTACCGAGTAGACTACTTGGAGTTTGTTGCTAAAGACAAGAACCCCCCTGGAGTAAAAGGCTATTGCATTGATGTCTTTGAAGCAGCCATAAACTTGTTGCCTTATGCTGTGCCACGAGAATATATATTATTTGGACATGGTGATAAAAACCCCAGCTATGACGGCCTTGTGAATCAGGTTGCACTAAATAACTTTGATGCAGCTGTAGGAGATGTTACAATTGTCCCAAACAGGACAAGGATTTTGGATTTTACTCAACCTTACATGGAGTCAGGGTTGGTGGTTGTTGTTCCTGTCAAGGAGATCAGATCAAGTCCTTGGTCTTTCCTCAAGCCATTCACCGCTCAAATGTGGTGTGTTACTGGTGCCTTTTTTCTTTTTGTGGGAACCGTTGTATGGATTCTTGAGCACCGGCACAATCCGGAGTTCCGAGGCAAGCCTACGAAACAACTTGCTACAGTCTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACTGTGAGTACTCTTGGGCGGTTGGTGCTAATCATATGGCTTTTTGTGGTGTTAATTATCAATTCAAGCTACACAGCTAGCTTAACATCCATCCTCACAGTGCAGCAACTGTCATCACAAATTGAAGGAATTGACAGCTTGATCTCAGGTACTCAACCAATTGGTATTCAAGAAGGGTCATTTGCACGGAAGTATCTGGTAGATGAACTCAACATACAAGAATCTAGGATAGTTGCGTTGAAAAATCAGGAAGCATATGTTCATGCCCTTATGCGTGGACCAAAAGGAGGAGGGGTTGTGGCCATTGTTGATGAGCTTCCTTACATTGAGCTCTTCATGTCCAATACCAATTGTAAATTCAGAACCGTTGGGCAGGAGTTCACTAAAAGTGGTTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCTGTTGATATGTCAACTGCCATTCTTCAACTCTCTGAGAACGGTGACCTGCAAAAGATCCATGACAAATGGCTTTTAAAACATGATTGTGCTGCAGTACTCGATAATGTTGATTCAAATAAACTATCTCTGAGTAGTTTCTGGGGTCTCTTTCTTATATGTGGCATTGCATGTTTCCTTGCTTTGATTGTGTTCTTTGTTAGAGTGCTCTGTCAATATACCAAATTCAACCCAGAGACTGAGGAAACTGACTTAGAAATTCAACCAGACAGCCGTAAAAGGACTATCCGAACTAAGAGCTTCAAGGATTTGATGGAATTTGTTGATAAGAGAGAAAAAGAAATCAAAGAGGTACTTAGGCAGAAGAGTAAAAAAAGGAGACTTAGCCAGGGCTCAGATGGCCAATCCAGTTCACCCAGCACCCAAGTAGAGTAA 2823 0.413 MEVVMFKGWTLFLLLVFCLWIPTEVVGRTGTTIANSTISSRPSVLRIGALFTFDSVIGRSAKAAIMAAVDDVNANTSILHGIKMEVIVHNTNCSGFLGTVEALQLMENEVVAAIGPQSSGIAHIISHVVNELHVPLLSFGATDPSLTSLQYPYFVRTTQSDYFQMYAIADFVDYYRWKEVIAIFVDDDNGRNGISVLGDALAKKRAKISYKAALLPKATNSDISDLLNGVNLMESRVYVLHVNPDSGLSIFSIAKKLGMMTSGYVWIATDWLPSVLDSVVAVDTDTLNLLQGVVAFRHHTPDTNLKKSFVNRLRNSKGKETASFNSYALYAYDSVWLAAYALDVFLKEGGIISFSSDPKLHDTNGSMLHLSSLRVFEGGPLFLQTLLRMNFTGLSGQIQFDMEKNLIRPAYDILNIGGFGTRRIGYWSNYSGLSVLAPEILYKKPPNTSTSNQQLHNVIWPGETTATPRGWVFPNNGKPLRIAVPYRVDYLEFVAKDKNPPGVKGYCIDVFEAAINLLPYAVPREYILFGHGDKNPSYDGLVNQVALNNFDAAVGDVTIVPNRTRILDFTQPYMESGLVVVVPVKEIRSSPWSFLKPFTAQMWCVTGAFFLFVGTVVWILEHRHNPEFRGKPTKQLATVFWFSFSTMFFSHRENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISGTQPIGIQEGSFARKYLVDELNIQESRIVALKNQEAYVHALMRGPKGGGVVAIVDELPYIELFMSNTNCKFRTVGQEFTKSGWGFAFQRDSPLAVDMSTAILQLSENGDLQKIHDKWLLKHDCAAVLDNVDSNKLSLSSFWGLFLICGIACFLALIVFFVRVLCQYTKFNPETEETDLEIQPDSRKRTIRTKSFKDLMEFVDKREKEIKEVLRQKSKKRRLSQGSDGQSSSPSTQVE 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2333g00005 940 SUPERFAMILY Periplasmic binding protein-like I 40 462 IPR028082 -
Gabi2333g00005 940 PIRSF IGluLR_plant 5 940 IPR017103 -
Gabi2333g00005 940 MobiDBLite consensus disorder prediction 926 940 - -
Gabi2333g00005 940 Pfam Receptor family ligand binding region 62 416 IPR001828 -
Gabi2333g00005 940 SUPERFAMILY Periplasmic binding protein-like II 458 822 - -
Gabi2333g00005 940 Gene3D - 591 716 - -
Gabi2333g00005 940 MobiDBLite consensus disorder prediction 917 940 - -
Gabi2333g00005 940 FunFam Glutamate receptor 591 721 - -
Gabi2333g00005 940 CDD PBP1_GABAb_receptor_plant 46 435 IPR044440 -
Gabi2333g00005 940 FunFam Glutamate receptor 160 327 - -
Gabi2333g00005 940 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 47 888 IPR015683 -
Gabi2333g00005 940 FunFam Glutamate receptor 475 591 - -
Gabi2333g00005 940 Gene3D - 160 433 - -
Gabi2333g00005 940 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 331 343 - -
Gabi2333g00005 940 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 58 74 - -
Gabi2333g00005 940 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 118 146 - -
Gabi2333g00005 940 FunFam Glutamate receptor 717 825 - -
Gabi2333g00005 940 Gene3D - 63 408 - -
Gabi2333g00005 940 SMART GluR_14 481 823 IPR001320 GO:0015276|GO:0016020
Gabi2333g00005 940 Pfam Bacterial extracellular solute-binding proteins, family 3 535 822 IPR001638 -
Gabi2333g00005 940 Pfam Ligand-gated ion channel 823 854 IPR001320 GO:0015276|GO:0016020
Gabi2333g00005 940 CDD GluR_Plant 478 821 - -
Gabi2333g00005 940 Gene3D - 717 824 - -
Gabi2333g00005 940 Gene3D - 475 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2333g00005 Gabi-Chr2333 36070 41273 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2333g00005 2 788 Ion Channels AT1G05200 66.709 0.0 1122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2333g00005 K05387 - gmx:100799912 1493.02