Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2333g00002 ATGAAGCAGTTTATGGTTTTGCACCTTGTAATTTGGATTTGGGCAATACTCCTTTGTGGTGTTGCTCAAAGCCGAAGGCCTGCCACTGTGAACATTGGTGCAGTTTTCACTTTCGATTCTGTCATAGGTAGAGCTGCGAAGGTGGCTATGGAAATGGCCGTTTCTGATGTCAATGAGGACCCACGAATTCTCAGTGGGACGAAACTCAACTTGATATCGAAGGATGGCGGTTGCAGTGCTTTTCTTGGATCAATTGGAGCTCTTCAGGTACTTGAGGAAGGGGTTGCAGCCATGATTGGCCCACAGTCATCTGCCATAGCTCATACAATTTCTCAAATTGCCGATGCTCTCCAAGTTCCTCTTCTTTCATATGCTGCCACTGATCCAACCCTGTCCTCCCTCCAGTTTCCTTTCTTTTTTCGTACGACACAAAGTGACTCAGAACAAATGACTGCAATGGCTGAACTAATTGAATTTAATGGATGGAAAGAGGTCATTGCTGTATTCTTGGATGATGATTATGGAAGAAATGGAATATCTGCTTTGGGTGATGAACTTGAAAAAAGGAGATTGAAAATGGCTCATAAACTACCTTTGAGTGTTAATTTTGATCTGGATGAGATCACTAACTTGCTGAATCAATCCAAACTGTTTGGTACTCGAGTGTATGTTATTCATGTCAACCCAGATCCAAGATTGAGAATTTTTTCCATTGCCAACAAACTTCAAATGATGGCCAATGACTATGTTTGGCTTGTAACAGATTGGCTCTCTGCTACCTTAGATTCATTATCCCCATTGAATCATACCTCTCTCAGTGTTCTACAAGGGGTTGTTGGTCTTTGTCAACACATTCCGGATTCCAAAAAAAAAAGAGCTTTTGTTTCTCGATGGATAAAATTGCAAAAAGAAGGTCTAGCAAATACTAGTTTGAACTCCTATGGATTTTATGCTTATGATACAGTTTGGACAGTTGCACATTCAATTGATAAGTTTTTGAAAGTGCATAATAATATGACCTTCTCTCCTCGTGATTTCTATATGCTACCTCATACAGAAAGAACTGGTATTCAGCTTGACAAGCTCAAAGTCTTTGCTGGTGGATCTGATTTGGTCAACATATTATTACAATCAAATTTTACTGGTCTGAGTGGTCTAATTCAGTTTAATAATTCAGACAGAAATATCATAAGTGGTGGTTATGATGTTATCAATATCAATCAGATGGCAATTAATAGGGTTGGTTATTGGTCTTATAATTCAGGATTTTCAGTTCTGCCCCCTGAAGTTCTTACAAAAAAAGAACATAGCAGGTTTTCCCCAGATCAAAAGCTTGACAATATCACTTGGCCAGGTGGAAAGACAGAAAGACCGCGCGGCTGGGTGATAGCTGATAATGCTAAGCCACTTAGAATTGGAGTGCCAAAGAGAGCAAGTTTTGTTGAATTTGTAACTGAACTGCAAGATAGTCATCAAATTCAGGGTTACTGCATTGATGTCTTCAAGAAAGCCCTTGAATTTATTCCATATCAAGTTCCTTTTGATTTCTATCCTTTTGGGACTGGTAAAGAAAATCCCAATTATGATGCACTTGTGAAGATGATTACTGAAAATGTATTTGATGCAGTTGTTGGAGACATTGCAATTGTGACAAACCGTACAAGGATTGTTGATTTTTCTCAGCCTTTTGCATCATCTAGCCTTGTTATAGTGGCTCCTATCAACAAAGCAAGATCAAATGCTTGGGTGTTCCTCAAACCATTTACAGCTGAAATGTGGTTTGTAACTGCTGCTTCATTTATGATGATTGGAGTGGTTATATGGGTTCTTGAGCACCGAGTCAACGATGATTTCCGCGGTCCTCCTAAGAGGCAAATTGTGACAATGTTTATGTTCAGTCTCTCAACACTGTTTAAGACAAATCAGGAAAAGACAGTAAGCTCACTTTCTAAAATGGTGATGATAGTCTGGCTTTTCCTATTGATGGTGATCACTGCCAGCTATACAGCAAGCTTGACTTCAATTCTTACTGTGGAGCAGCTTTCATCACCCATAACTGGAATTGATAGTTTGATTGCAAGTAACTGGCCTATTGGATACCAAGTAGGGTCATTTGCTTACAGCTATTTGTCAGATAATCTTTATGTACAAAGATCAAGGCTTGTTTCCCTAGGCTCCCCTGAGGAATATGCAATAGCCCTGCAAAAGGGGCCATCTGGTGGAGGAGTGGCAGCTATCATTGATGAGCTTCCTTATGTGGAGTTATTTCTGTCAAAAACTACTGATTTTGGTATTATCGGACAGCCATTTACTAGAAGCAGTTGGGGATTTGCTTTTCAGAGAGACTCTCCTCTTGCCCTTGACATGTCTACAGCAATTTTGAAACTCTCCGAGAGTGGAGAGCTTCAAAAGATACATGACAAGTGGTTATGTAAGATGGGTTGTCCTGGAGAAAGGAATAGCAACTCTGAGCCTGACCAACTTCACTTGGTTAGCTTTTGGGGACTATATCTCTCATGTGGTGTTGTCTCTCTAGCCGCTCTTGTGCTGTTTCTGCTGCGAATAATTCGCCAATATGGCCGCTTCAAACAAAGACAAAAGGATATTGCTTCTTCATCTTCAGAACCATCAGGCATTCATTGTTCCCAGGTTGTTGTTAACTTCTTTAACTTCATTGATAAGAAGGAAGAGGCCATCAAGAAAATGTTCACTCAATGTGACAATCAACACAACCCCAGCTGA 2742 0.4019 MKQFMVLHLVIWIWAILLCGVAQSRRPATVNIGAVFTFDSVIGRAAKVAMEMAVSDVNEDPRILSGTKLNLISKDGGCSAFLGSIGALQVLEEGVAAMIGPQSSAIAHTISQIADALQVPLLSYAATDPTLSSLQFPFFFRTTQSDSEQMTAMAELIEFNGWKEVIAVFLDDDYGRNGISALGDELEKRRLKMAHKLPLSVNFDLDEITNLLNQSKLFGTRVYVIHVNPDPRLRIFSIANKLQMMANDYVWLVTDWLSATLDSLSPLNHTSLSVLQGVVGLCQHIPDSKKKRAFVSRWIKLQKEGLANTSLNSYGFYAYDTVWTVAHSIDKFLKVHNNMTFSPRDFYMLPHTERTGIQLDKLKVFAGGSDLVNILLQSNFTGLSGLIQFNNSDRNIISGGYDVININQMAINRVGYWSYNSGFSVLPPEVLTKKEHSRFSPDQKLDNITWPGGKTERPRGWVIADNAKPLRIGVPKRASFVEFVTELQDSHQIQGYCIDVFKKALEFIPYQVPFDFYPFGTGKENPNYDALVKMITENVFDAVVGDIAIVTNRTRIVDFSQPFASSSLVIVAPINKARSNAWVFLKPFTAEMWFVTAASFMMIGVVIWVLEHRVNDDFRGPPKRQIVTMFMFSLSTLFKTNQEKTVSSLSKMVMIVWLFLLMVITASYTASLTSILTVEQLSSPITGIDSLIASNWPIGYQVGSFAYSYLSDNLYVQRSRLVSLGSPEEYAIALQKGPSGGGVAAIIDELPYVELFLSKTTDFGIIGQPFTRSSWGFAFQRDSPLALDMSTAILKLSESGELQKIHDKWLCKMGCPGERNSNSEPDQLHLVSFWGLYLSCGVVSLAALVLFLLRIIRQYGRFKQRQKDIASSSSEPSGIHCSQVVVNFFNFIDKKEEAIKKMFTQCDNQHNPS 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2333g00002 913 CDD PBP1_GABAb_receptor_plant 31 425 IPR044440 -
Gabi2333g00002 913 Gene3D - 48 398 - -
Gabi2333g00002 913 FunFam Glutamate receptor 145 304 - -
Gabi2333g00002 913 Gene3D - 145 422 - -
Gabi2333g00002 913 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 867 IPR015683 -
Gabi2333g00002 913 Gene3D - 581 712 - -
Gabi2333g00002 913 SUPERFAMILY Periplasmic binding protein-like I 24 462 IPR028082 -
Gabi2333g00002 913 FunFam Glutamate receptor 465 581 - -
Gabi2333g00002 913 FunFam Glutamate receptor 707 814 - -
Gabi2333g00002 913 Pfam Bacterial extracellular solute-binding proteins, family 3 482 810 IPR001638 -
Gabi2333g00002 913 PIRSF IGluLR_plant 1 913 IPR017103 -
Gabi2333g00002 913 Gene3D - 465 580 - -
Gabi2333g00002 913 SMART GluR_14 469 812 IPR001320 GO:0015276|GO:0016020
Gabi2333g00002 913 CDD GluR_Plant 468 810 - -
Gabi2333g00002 913 Gene3D - 758 817 - -
Gabi2333g00002 913 Pfam Ligand-gated ion channel 811 842 IPR001320 GO:0015276|GO:0016020
Gabi2333g00002 913 SUPERFAMILY Periplasmic binding protein-like II 449 810 - -
Gabi2333g00002 913 FunFam Glutamate receptor 581 719 - -
Gabi2333g00002 913 Pfam Receptor family ligand binding region 47 407 IPR001828 -
Gabi2333g00002 913 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 234 257 - -
Gabi2333g00002 913 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 103 131 - -
Gabi2333g00002 913 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 43 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2333g00002 Gabi-Chr2333 16369 21949 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2333g00002 16 911 Ion Channels AT2G32400 56.208 0.0 1025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2333g00002 K05387 - gmx:100784247 1518.06