Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2328g00049 ATGGGGACGGAGGTGACGGGGAGATGGGGCACTTGGGAGGAGCTCCTCCTCGGTGGGGCCGTTCTCCGCCACGGGACCCGAGACTGGAAAGTCGTCGCCGCCGAGCTCCGAGCCCGAACCGTTTGTCCGTACACTTTCACCCCCGAGGTCTGTAAAGCCAAGTATGAAGACTTGCAACAGCGGTATTCTGGGACCATGGCTTGGTTTGAGGAGCTTAGGAAGAAAAGAGTAGCAGAGCTGAAGAGAGCTCTAGAGCTATCTGAAGATTCTATTGGGTCTCTTGAATCAAAGCTTGAATTCCTCAAGGCTGGGAAGAATGAGGAAAAAGATGATTGTCATGTTGACAATGGTTCAGGTAGTCCAGAATTACCTGTACCTTCACAGAAATTGGAGAGAGTTGAATCTTCCACTAAAGATACCTCAAAGGATGGGCTATCTGCTGGGAGTTTCACACATGAAACCAGGACAAACTGGTCTCCTGAATGCCATGTTGCAGCTGTGTCTGCTGAAGATATGGAGACTAAGCCTGAAGTTTCACCCTCTACTGAACAGGTCAAAGTTTTGAATGTAGATAAGTTGGCACATACTATATATGAAGGGCAAGGAGGAACTTTAAAAAAACGGAGAGGGAAAAGGAAGAGGAAGGGTTGTGGCATAAATATTAAGGAAGCAAGTGTGGGAGAAAGTGACTTACTGGATTCAGCTGATGTTGTATCATGGTGTAAAGAAAGTTCTACTAGCAACTGCGGTGAAGTTGCCAAATCTTCTGGTCTAGATGATCAAAATAGGAACTTGAAAAAGGATGAGACTGAAAATATGATGGAGATTTTAGATTCTATTTTCGAAACTAAAGGTGCCTCAGCCTTCCGTCGCAGACTTGATAGTCAGAAGAGAGGAAGGTACAAGAAAATGATCCGGCGGCACATGGACTTTGACACAATAAGATCAAGAATTAGCAACCAAACAATCAAGTCAGTCAAAGAACTTTTCCGAGACTTGCTGCTACTAACTAACAATTCTTTAGTCTTCTACTCCAAGAGCACTCGTGAATATAAGTCTGCTCTAATGCTAAGAGACATTGTAACCAAAAAATTGAGGGAGAGTTTGAAGGGTATTAGCAGCAAAGCCACCGAGGCTAATGTGTGTATTAAATTACCTTTGCAAAACCATCATGTGAAACCAAGAAGTGTACGACCAGGTAACAGAAAAATTGTTGCAAAAGCAGTTGGTGGCAGCAACTCTGCATCTGGGGTGTCACTGTCACATGGAGCTAAGAAACCAAGTAAAGTTGATTCCCCATCCTCAGTGGAATGCTTACCTGTCAAGAAGAAAGCTTTTGGTAGACCAAAAAAGGTTGGACGTGGGACACCAGGTCAAAGGCCTGCAACACCTATCAAAGGAAAGAAAAGGGTTAGAACAAAGTCATAG 1428 0.444 MGTEVTGRWGTWEELLLGGAVLRHGTRDWKVVAAELRARTVCPYTFTPEVCKAKYEDLQQRYSGTMAWFEELRKKRVAELKRALELSEDSIGSLESKLEFLKAGKNEEKDDCHVDNGSGSPELPVPSQKLERVESSTKDTSKDGLSAGSFTHETRTNWSPECHVAAVSAEDMETKPEVSPSTEQVKVLNVDKLAHTIYEGQGGTLKKRRGKRKRKGCGINIKEASVGESDLLDSADVVSWCKESSTSNCGEVAKSSGLDDQNRNLKKDETENMMEILDSIFETKGASAFRRRLDSQKRGRYKKMIRRHMDFDTIRSRISNQTIKSVKELFRDLLLLTNNSLVFYSKSTREYKSALMLRDIVTKKLRESLKGISSKATEANVCIKLPLQNHHVKPRSVRPGNRKIVAKAVGGSNSASGVSLSHGAKKPSKVDSPSSVECLPVKKKAFGRPKKVGRGTPGQRPATPIKGKKRVRTKS 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2328g00049 475 Coils Coil 77 97 - -
Gabi2328g00049 475 MobiDBLite consensus disorder prediction 140 154 - -
Gabi2328g00049 475 SUPERFAMILY Bromodomain 258 369 IPR036427 GO:0005515
Gabi2328g00049 475 MobiDBLite consensus disorder prediction 109 154 - -
Gabi2328g00049 475 MobiDBLite consensus disorder prediction 409 475 - -
Gabi2328g00049 475 Gene3D - 259 374 IPR036427 GO:0005515
Gabi2328g00049 475 ProSiteProfiles Bromodomain profile. 281 351 IPR001487 GO:0005515
Gabi2328g00049 475 Pfam Bromodomain 274 354 IPR001487 GO:0005515
Gabi2328g00049 475 SMART bromo_6 266 370 IPR001487 GO:0005515
Gabi2328g00049 475 CDD SANT 8 55 IPR001005 -
Gabi2328g00049 475 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 4 433 - -
Gabi2328g00049 475 CDD Bromodomain 275 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2328g00049 Gabi-Chr2328 236536 241933 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi2328g00049 Bromodomain 6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2328g00049 - - gmx:100804245 729.169