Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2328g00004 ATGGCCTCTGCTTCGTCTTCTTCTTCGTCCTCCTCCAAGCTCTGCTTCAATTCTGACTGCAAAGAATTGAAGTCCGAAAGACCTAAGAAAGGTTGGAGACTCCGTAACGGAGATCTAGCCGAGCTTTGCGATCGATGCGGTTCTGCTTTTGAAGAAGGGACATTCTGTGAAATTTTTCACTCAAATGCTTCTGGTTGGAGGAATTGTGATACTTGTAGAAAGCGGATTCATTGTGGGTGTATTGTTTCAAGTCATGCCTTTGTGTTGTTGGATCCTGGAGGAATTGAATGCTTTGCATGTGCCCGCAAAAATATTGTTTTGACATCTAACCTGCCGTGGCCACAATCTTTTTCCCTTCAAAATCGTTTATCTGAAAGACTTAGAGACCTGTCTGCCAAAAGTTGGAGTCAATTAGCTGGATCAGGTCCTGTACCATGGAAGCAAGCACCCAGTCTGTTCAATTCAGTTTCTTCATCCGACCTGCTTCCAGATGTGCCCTCTCTAGTTGAATTATCAAATGGCTTTGACAAAATTTATGGCAATGAAAGGTTACCTGCTTCGTCTTTGGAAAAGAAAAATGAGGATTTGTCTGGAATATCAGTTAATTGGAATGTTAAGCTTGGCACACGGGAAATGATGCTTATGAATGGAATGAGAAATGATGACAAATCAAGTTCGTGTTTAAATATGTGCCAACAGCCTTCTTCTCTGAAGGAAGAACCATCTCCTCAACCATTTGGTTTGTCTGTACCTTATTCATCTCCAAATGAAAGAAATGGTCAAATTGGGGTAGCTGGAAGTCATCCACAACAAACTCCACCTCCTCCAGGAAAGCAATTTAGTGGCACTATGCATTTAACGATTGACTCATCAGGTGAAGCTCAGGTTCGCAATGGACGGCCTCGAGCAGATGCCCGAGGAAGAAACCAGTTACTGCCACGGTACTGGCCCAGGTGTACGGATCTGGAGCTACAGCAAATATCTATAGACTCTAATTCTGTAATTACTCCCTTGTTTCAAAAAACCTTGAGTGCCAGTGATGCTGGGCGAATTGGGCGTTTAGTGCTACCAAAGAAGTGTGCTGAGACCTACTTCCCACCAATTTCTCAGCCTGAAGGATTGCCACTTAAAATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAGTTTCGGTTCTGGCCAAACAATAACAGCAGAATGTATGTTTTAGAGGGTGTCACTCCATGCATACAGTCCATGCAGTTGCAAGCAGGTGACACAGTAACATTTAGCCGGTTGGAGCCAGAAGGGAGGTTAGTTATGGGATTTAGAAAGGCTTCAAGTGCTATGCCATCTGATCAGGACAATGAAACTAATAAGACTGGAAATGGATTTTCTGCACATGGTGAAGTTGAATTGGCTGATCCTGGTTCATGGTCTAAAGTGGATAAGTCAGGATACATCGCAAAAGAAGCATTGGGGAGCAAATCTTCAATGTCTAGAAAGAGAAAAAGCAGCATATTGGGTTCAAAGAGTAAACGTCTAAGAATAGAAAATGAGGATCTAATAGAGCTGAAGATTACATGGCAAGAAGCTCAAGGTCTACTCCGTCCTCCTCCCAGCCATGTTCCAAGCATTGTGGTGATTGAAGGTTTTGAATTCGAGGAATATGAGGATGCTCCAGTGCTTGGGAAGCCTACAATTTTCACCAGTGATAATGTGGGTAAAAAGATCCAGTGGGCTCAATGCGAAGATTGTCTCAAGTGGCGCAAATTGCCAGCAAGTGCACTTCTTCCATCAAAATGGACGTGTTCTGATAATTCATGGGATCCAGAAAGATCTTCTTGTTCAGCTGCGCAAGAGCTGACAGCGGAACAACTTGAGAATTTGCTACCTTCTTGTAATTCAGCTGTTTCCAAGAAAATAAAGGCCACCAAGCAGGATCCTGATCATGCTGAAGCTTTGGAGGGACTTGACACACTTGCAAATCTAGCCATCCTGGGAGAGGGTGAGGCACTCCCATCGTCTGCCCAAGCCACAACGAAACACCCACGTCATAGACCTGGCTGCTCTTGCATTGTTTGCATTCAGCCTCCCAGTGGAAAGGGCCCCAAGCATAAGCAGACATGCACATGTAATGTCTGCCTGACAGTGAAGCGTCGTTTCCGTACCCTTATGTTACGGCGTGAGAAGAAACAATCAGAAAGAGAAGCAGAGACAACACGTAAAAAGCAGCAGCAACAGCATCCTCAGCCATTACCTTCATCTGAAATTTTGCTTGATGATGATTCTTTGCCTTGTAGTAACACGGGTGAAAGTAGCCCAAACCAGAACAAGGAGGGCAATGATGGTTCTGATGATGATCCTAACCGGATAAAATCATCTGCTTCGCCATTCAAAGGCCAAATTGATCTCAATATCCAGCCAGAGAGAGAAGAAGAATTATCACCCGGTTCAGATTCTGGCGGCATGATGAAGTTGCTCCATGATGCTACCGAGAGGTATCTCAAGCAGCAGACTGGGTTGAACTCTGGTACTGGAGATACATCAGGCAGTCAATTGCAGCAGGTTGGAGATGTAGTGAGGGAAGAGAAACTTAGCAATGGTGTTGCCCGTGGCAGTAATAGTCATAATGCTGATAAGGAACATGCCCAATCTTTGTCTATGAATGTGTGA 2655 0.4433 MASASSSSSSSSKLCFNSDCKELKSERPKKGWRLRNGDLAELCDRCGSAFEEGTFCEIFHSNASGWRNCDTCRKRIHCGCIVSSHAFVLLDPGGIECFACARKNIVLTSNLPWPQSFSLQNRLSERLRDLSAKSWSQLAGSGPVPWKQAPSLFNSVSSSDLLPDVPSLVELSNGFDKIYGNERLPASSLEKKNEDLSGISVNWNVKLGTREMMLMNGMRNDDKSSSCLNMCQQPSSLKEEPSPQPFGLSVPYSSPNERNGQIGVAGSHPQQTPPPPGKQFSGTMHLTIDSSGEAQVRNGRPRADARGRNQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSAMPSDQDNETNKTGNGFSAHGEVELADPGSWSKVDKSGYIAKEALGSKSSMSRKRKSSILGSKSKRLRIENEDLIELKITWQEAQGLLRPPPSHVPSIVVIEGFEFEEYEDAPVLGKPTIFTSDNVGKKIQWAQCEDCLKWRKLPASALLPSKWTCSDNSWDPERSSCSAAQELTAEQLENLLPSCNSAVSKKIKATKQDPDHAEALEGLDTLANLAILGEGEALPSSAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEREAETTRKKQQQQHPQPLPSSEILLDDDSLPCSNTGESSPNQNKEGNDGSDDDPNRIKSSASPFKGQIDLNIQPEREEELSPGSDSGGMMKLLHDATERYLKQQTGLNSGTGDTSGSQLQQVGDVVREEKLSNGVARGSNSHNADKEHAQSLSMNV 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2328g00004 884 Gene3D - 571 624 - -
Gabi2328g00004 884 MobiDBLite consensus disorder prediction 829 850 - -
Gabi2328g00004 884 MobiDBLite consensus disorder prediction 440 464 - -
Gabi2328g00004 884 Pfam B3 DNA binding domain 339 438 IPR003340 GO:0003677
Gabi2328g00004 884 SMART B3_2 339 440 IPR003340 GO:0003677
Gabi2328g00004 884 MobiDBLite consensus disorder prediction 220 282 - -
Gabi2328g00004 884 MobiDBLite consensus disorder prediction 721 737 - -
Gabi2328g00004 884 Pfam CW-type Zinc Finger 572 614 IPR011124 GO:0008270
Gabi2328g00004 884 MobiDBLite consensus disorder prediction 862 884 - -
Gabi2328g00004 884 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 12 843 - -
Gabi2328g00004 884 ProSiteProfiles Zinc finger CW-type profile. 567 617 IPR011124 GO:0008270
Gabi2328g00004 884 SUPERFAMILY DNA-binding pseudobarrel domain 336 439 IPR015300 -
Gabi2328g00004 884 MobiDBLite consensus disorder prediction 220 268 - -
Gabi2328g00004 884 ProSiteProfiles B3 DNA-binding domain profile. 339 440 IPR003340 GO:0003677
Gabi2328g00004 884 MobiDBLite consensus disorder prediction 442 458 - -
Gabi2328g00004 884 MobiDBLite consensus disorder prediction 720 884 - -
Gabi2328g00004 884 Gene3D - 317 443 IPR015300 -
Gabi2328g00004 884 CDD B3_DNA 337 438 IPR003340 GO:0003677
Gabi2328g00004 884 FunFam B3 domain-containing transcription repressor VAL1 317 444 - -
Gabi2328g00004 884 MobiDBLite consensus disorder prediction 755 773 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2328g00004 Gabi-Chr2328 61806 73718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2328g00004 12 740 B3 DNA Binding Superfamily AT2G30470 42.819 5.60e-166 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi2328g00004 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2328g00004 K09287 - gmx:100782114 1630.54