Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2327g00001 ATGGGTGTGTGCACTTCAAAACCTCGTGCAAACCCCACACTCTCTTCTCCAAATTCCGTTACACACACAGAAACCACTTCTAACGCTAAGCCTCGTTCCAATGGAGAAAACCCTACCCTTACCCACATCAACAGCGTTAAAAAATCTCCCCTTTTCCCATTTTGCAGTCCCAGCCCTGCCCACCATTTGGTCCCCAGCAAGTCACCGGCAGCGAGCACGCCGCGGCGGTTCTTCAAGCCTCCGTCGCCGGCGAAGCTCATAAGGGCGGTGCTGGCTCGCCGCCACGGTTCCGTGAAGCCGAACGAGGACACAATACCGGAAGGTAGCAAAGCTGAGGTGGTTGCTTTGGATAAAAATTTTGGGTTCAAAAAGCATTTTGAGAACGAGTTTGAGCTTGGGAAAGAGGTTGGGAGAGGGCATTTTGGGTACACTTGTGCTGCCAAGTTCATCGAGGGTAACCTTAAAGGCCAACAGGTCGCTGTTAAGGTCATCCCAAAAGCCAAGATGACAAATGCTATTGCTATTGAGGATGTGAGAGGGGAAGTGAAAATATTGAGAGCTTTAACTGGACATAAGAATCTAGTACAATTCTACGATGCATTTGAAGACCATGATAACGTCTATATAGTAATGGAGTTGTGTGAAGGAGGGGAGCTTTTGGACAGAATAATATCAAGAGGGGGGAAATACTCAGAGGAAGATGCAAAAGCTGTCTTGACGCAAATACTGAATGTTGTTGCATTTTGCCACCTACAGGGTGTTGTGCATCGCGATCTTAAACCTGAGAACTTCTTGTTCACATCCAAAGACGAGAACTCAGAGCTGAAGGTCATAGATTTTGGCTTGTCTGATTTTGTTAAACCGGATGAAAGGCTTATTGATATTGCTGGTAGTGCATACTATGTGGCTCCTGAAGTTCTGCTTAGAGCTTACAGTACAGAGGCTGACGTATGGAGTATTGGTGTGATTGCATATATATTATTATGTGGCCGTCGTCCATTTTGGGCACGGACTGAATCTGGGATATTTCGTGCTGTATTGAAAGCTGATCCAATTTTTTATGAACCTCCTTGGCCTTCTCTGTCAGACGAGGCCAAGGATTTTGTTAAGCGATTACTGAATAAAGATCCAAGGAAAAGAATGACTGCAGCACAGGCATTAGGTCATCCATGGATTAAAAATTATAAGGATGTAAAAGTACCCCTGGATATTCTAGTGTTCAATCTCATGAAGGCATACATGCATTCCTCCTCTCTACGAAAAGCAGCTTTAAAGGCTCTGTCTAAGACGTTGACTATTGATGAGCTTCATTATTTGAAGGAGCAGTTTACACTTTTAGAGCCAAACAAAAATGGCACTATTAGTTTGGAAAATATCAAAGTGGCCTTGATGAAGAATGCAACGGATGCTATGAAGGAGTCACGCATTCCAGATTTACTGGCTTCACTTAATGCATTGCAATATAGAAGGATGGATTTTGATGAGTTTTGTGCAGCTGCACTTAGTGTTCATCAACTTGAAGCACTTGTACGGTGGGAGCAACATGCACGCTGTGCCTATGAACTTTTTGAAAAGGATGGAAACAGGGCAATAGTCATTGAGGAATTAGCTTCGGATCTTGGCCTTGGTCCATCTGTCCCTGTTCATGCTGTTCTTCATGATTGGATTAGGCACACCGATGGAAAGTTAAGCTTCCTTGGATTTGTTAAATTGTTGCATGGTCCATCTCGAAGTCTTGTATAG 1743 0.4412 MGVCTSKPRANPTLSSPNSVTHTETTSNAKPRSNGENPTLTHINSVKKSPLFPFCSPSPAHHLVPSKSPAASTPRRFFKPPSPAKLIRAVLARRHGSVKPNEDTIPEGSKAEVVALDKNFGFKKHFENEFELGKEVGRGHFGYTCAAKFIEGNLKGQQVAVKVIPKAKMTNAIAIEDVRGEVKILRALTGHKNLVQFYDAFEDHDNVYIVMELCEGGELLDRIISRGGKYSEEDAKAVLTQILNVVAFCHLQGVVHRDLKPENFLFTSKDENSELKVIDFGLSDFVKPDERLIDIAGSAYYVAPEVLLRAYSTEADVWSIGVIAYILLCGRRPFWARTESGIFRAVLKADPIFYEPPWPSLSDEAKDFVKRLLNKDPRKRMTAAQALGHPWIKNYKDVKVPLDILVFNLMKAYMHSSSLRKAALKALSKTLTIDELHYLKEQFTLLEPNKNGTISLENIKVALMKNATDAMKESRIPDLLASLNALQYRRMDFDEFCAAALSVHQLEALVRWEQHARCAYELFEKDGNRAIVIEELASDLGLGPSVPVHAVLHDWIRHTDGKLSFLGFVKLLHGPSRSLV 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2327g00001 580 MobiDBLite consensus disorder prediction 1 43 - -
Gabi2327g00001 580 Gene3D - 432 501 - -
Gabi2327g00001 580 ProSitePatterns Protein kinases ATP-binding region signature. 136 162 IPR017441 GO:0005524
Gabi2327g00001 580 Gene3D Transferase(Phosphotransferase) domain 1 219 404 - -
Gabi2327g00001 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Gabi2327g00001 580 FunFam Calcium-dependent protein kinase SK5 302 397 - -
Gabi2327g00001 580 Pfam Protein kinase domain 130 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2327g00001 580 Gene3D Phosphorylase Kinase; domain 1 123 218 - -
Gabi2327g00001 580 FunFam CDPK-related kinase 1 123 218 - -
Gabi2327g00001 580 SUPERFAMILY Protein kinase-like (PK-like) 128 421 IPR011009 -
Gabi2327g00001 580 SUPERFAMILY EF-hand 420 574 IPR011992 -
Gabi2327g00001 580 MobiDBLite consensus disorder prediction 8 43 - -
Gabi2327g00001 580 FunFam CDPK-related kinase 1 427 501 - -
Gabi2327g00001 580 Gene3D - 410 571 - -
Gabi2327g00001 580 ProSiteProfiles Protein kinase domain profile. 130 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2327g00001 580 SMART serkin_6 130 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2327g00001 580 PANTHER SERINE/THREONINE-PROTEIN KINASE 116 558 - -
Gabi2327g00001 580 FunFam CDPK-related kinase 3 122 294 - -
Gabi2327g00001 580 CDD STKc_CAMK 130 391 - -
Gabi2327g00001 580 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2327g00001 Gabi-Chr2327 21083 24590 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2327g00001 1 576 EF-hand Containing Proteins AT3G50530 71.840 0.0 892
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi2327g00001 Pkinase 2.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2327g00001 K13412 - gmx:100803313 961.829