Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2324g00008 ATGTTGGTCTCAGATTTTGTAGGACGTTGCCTTCAAGTTGAGGGTTCTGCAGTTCAGTGTAATAATGAAAATCCTACATGTGATGGTCACTCTGTATCTGTACCGTATTTGAAGGATTGGCATTTTGTAAAGGAGTATCCAGATTATGTCCCATATGTCACTCCTTTGTTCTTTTGTGATGATTGGCTCAACATGTATCTTGACAACTTCAGAATGCATACAGATTCTGACACATACCAACAAAATAAGGAAATATGTTGCTCTGACTATCGATTTGTTTACATGGGGATGAAAGGATCTTGGACTCCTCTTCATGCTGATGTTTTCAGGTCCAATAGCTGGTCAGCAAATATCTGTGGAAAGAAGAGATGGCTTTTTCTAGATCCTTCCCAGTGTCATCTTGTATTTGACAGGAATATGAAAAGCTGCGTATATAATATTTTTGATGAAATATCTGACTCAAAATTTCCTGGTTTTAAAAAGGCTATCTGGTTAGAATGCACACAAGAAGCAGGTGAAATTATATTTGTTCCCAGCGGATGGTATCATCAAGTTCATAATTTGGAGGATACGATATCTATAAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGAATTTACTTTTAAGGGACTACAACGAGGCCAAGGAATACATAGAAGACATCAAGGATGTATGTGATGATTTTGAAGGTCTCTGCCAGCGCAATCTTGCTGCTAACACAGGGATGAATTTTTATGACTTCTTTATTTTCCTGTCATACTTCACCATGGCCAACTTGGTGTTGCTCTGCTATATAAATGGAAGACATGGAAGTGCTACTGGAAGCTCAACAGTAGCTCAGCATTTATCTATGAATCTTGGGTCTATAAGGAAGATTGCATCAGAGATGAAACACGTGCATGCTCTGGAAGGAAATCATGATTGTGTTGTGGATATGATCAAAACATTTGAAGATCCTAGGTTTTCCAAATTGTGCATGCATATGGGAAGAACTTATGTGATGATACATAAAATATCTTATTTGTCCTCTGATTTTGAGAGCGCTTCAGTGTGTGATTTGGTAGACCTCAATGTTTTAAAAGCATACACTTCTTCTCAGGTCTACACCCCTGAAGATCTCATTAAATTCATAGACAATGCTGTTGCAGAGCTGGGTGATTGTTACGTTGAGTCATCTATACTACGTGTTGCTTGA 1206 0.3823 MLVSDFVGRCLQVEGSAVQCNNENPTCDGHSVSVPYLKDWHFVKEYPDYVPYVTPLFFCDDWLNMYLDNFRMHTDSDTYQQNKEICCSDYRFVYMGMKGSWTPLHADVFRSNSWSANICGKKRWLFLDPSQCHLVFDRNMKSCVYNIFDEISDSKFPGFKKAIWLECTQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYNEAKEYIEDIKDVCDDFEGLCQRNLAANTGMNFYDFFIFLSYFTMANLVLLCYINGRHGSATGSSTVAQHLSMNLGSIRKIASEMKHVHALEGNHDCVVDMIKTFEDPRFSKLCMHMGRTYVMIHKISYLSSDFESASVCDLVDLNVLKAYTSSQVYTPEDLIKFIDNAVAELGDCYVESSILRVA 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2324g00008 401 Pfam JmjC domain, hydroxylase 93 198 IPR003347 -
Gabi2324g00008 401 Gene3D Cupin 1 199 - -
Gabi2324g00008 401 ProSiteProfiles JmjC domain profile. 32 215 IPR003347 -
Gabi2324g00008 401 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 3 254 - -
Gabi2324g00008 401 SMART cupin_9 35 215 IPR003347 -
Gabi2324g00008 401 SUPERFAMILY Clavaminate synthase-like 31 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2324g00008 Gabi-Chr2324 83673 88816 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2324g00008 36 207 Glycosyltransferase AT1G78280 24.599 7.30e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi2324g00008 Cupin_8 6.3e-17 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2324g00008 - - gmx:100803814 707.983