Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2324g00007 ATGGGTATCAACATAAAGGGGCAAGTAGAGAAGGTGAATGTGAAGGAATTGCGTTACAGTGAATTTGCGGAGAGATATATGGAGAAGAACCACCCCGTCGTGCTTACTGGACTAATGGACCATCATTGGAGGGCTTCCACTGATTGGGTCAACCCTGATGGTCAACCCAATCTTCAATTTTTCTCCACTCATTTTGGGTCTTCTAAAGTTCAGGTTGCAGATTGTGACATCAGAGAATTCACTGATCAGAAAAGAGAGGAGATGTTGGTCTCAGATTTTGTAGGACGTTGCCTTCAAGTTGAGGGTTCTGCAGTTCAGTGTAATAATGAAAATCCTACATGTGATGGTCACTCTGTATCTGTACCGTATTTGAAGGATTGGCATTTTGTAAAGGAGTATCCAGATTATGTCCCATATGTCACTCCTTTGTTCTTTTGTGATGATTGGCTCAACATGTATCTTGACAACTTCAGAATGCATACAGATTCTGACACATACCAACAAAATAAGGAAATATGTTGCTCTGACTATCGATTTGTTTACATGGGGATGAAAGGATCTTGGACTCCTCTTCATGCTGATGTTTTCAGGTCCAATAGCTGGTCAGCAAATATCTGTGGAAAGAAGAGATGGCTTTTTCTAGATCCTTCCCAGTGTCATCTTGTATTTGACAGGAATATGAAAAGCTGCGTATATAATATTTTTGATGAAATATCTGACTCAAAATTTCCTGGTTTTAAAAAGGCTATCTGGTTAGAATGCACACAAGAAGCAGGTGAAATTATATTTGTTCCCAGCGGATGGTATCATCAAGTTCATAATTTGGAGGATACGATATCTATAAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGAATTTACTTTTAAGGGACTACAACGAGGCCAAGGAATACATAGAAGACATCAAGGATGTATGTGATGATTTTGAAGGTCTCTGCCAGCGCAATCTTGCTGCTAACACAGGGATGAATTTTTATGACTTCTTTATTTTCCTGTCATACTTCACCATGGCCAACTTGGTGTTGCTCTGCTATATAAATGGAAGACATGGAAGTGCTACTGGAAGCTCAACAGTAGCTCAGCATTTATCTATGAATCTTGGGTCTATAAGGAAGATTGCATCAGAGATGAAACACGTGCATGCTCTGGAAGGAAATCATGATTGTGTTGTGGATATGATCAAAACATTTGAAGATCCTAGGTTTTCCAAATTGTGCATGCATATGGGAAGAACTTATGTGATGATACATAAAATATCTTATTTGTCCTCTGATTTTGAGAGCGCTTCAGTGTGTGATTTGGTAGACCTCAATGTTTTAAAAGCATACACTTCTTCTCAGGTCTACACCCCTGAAGATCTCATTAAATTCATAGACAATGCTGTTGCAGAGCTGGGTGATTGTTACGTTGAGTCATCTATACTACGTGTTGCTTGA 1467 0.3926 MGINIKGQVEKVNVKELRYSEFAERYMEKNHPVVLTGLMDHHWRASTDWVNPDGQPNLQFFSTHFGSSKVQVADCDIREFTDQKREEMLVSDFVGRCLQVEGSAVQCNNENPTCDGHSVSVPYLKDWHFVKEYPDYVPYVTPLFFCDDWLNMYLDNFRMHTDSDTYQQNKEICCSDYRFVYMGMKGSWTPLHADVFRSNSWSANICGKKRWLFLDPSQCHLVFDRNMKSCVYNIFDEISDSKFPGFKKAIWLECTQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYNEAKEYIEDIKDVCDDFEGLCQRNLAANTGMNFYDFFIFLSYFTMANLVLLCYINGRHGSATGSSTVAQHLSMNLGSIRKIASEMKHVHALEGNHDCVVDMIKTFEDPRFSKLCMHMGRTYVMIHKISYLSSDFESASVCDLVDLNVLKAYTSSQVYTPEDLIKFIDNAVAELGDCYVESSILRVA 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2324g00007 488 Pfam Cupin-like domain 21 285 IPR041667 -
Gabi2324g00007 488 ProSiteProfiles JmjC domain profile. 119 302 IPR003347 -
Gabi2324g00007 488 SMART cupin_9 122 302 IPR003347 -
Gabi2324g00007 488 SUPERFAMILY Clavaminate synthase-like 20 312 - -
Gabi2324g00007 488 Gene3D Cupin 3 286 - -
Gabi2324g00007 488 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 10 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2324g00007 Gabi-Chr2324 83673 89011 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2324g00007 7 294 Glycosyltransferase AT1G78280 22.772 2.26e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi2324g00007 Cupin_8 1.5e-23 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2324g00007 - - gmx:100803814 848.966