Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2323g00009 ATGGAAGATTCTTATCTGAAGCTCATTTCCTTCCTCATCCTATCACTCGCTTGGGTGGTTCTCACAGACACGAACCCAAATGATGTAAATATTCTGAACCAATTCAGAAAAGGGTTGAAGAACCCTGAACTGTTGCAGTGGCCAGAAGAAGAAGAAGGAGGAGACCCATGTGGCAATCCTCCATGGAAATACATCTACTGCAACGGAAACAGAATTTCTCAGATTCAAGCCAAGAACTTGAACCTTGTGGGTTCTCTGCCTCAGAACATGAACCAACTCACCATGTTGGAGAATCTAGGCCTTCAGAACAACAAGCTCAATGGTCCCTTACCATCTTTCAGTGGCTTGTCAAAGTTAAAGTATGCGTTTTTGAACTACAACGAGTTCGAATCCATCCCTGAAGATTTCTTTGATGGGCTTGAGAGTCTTGAGGTTTTGGCATTGGATTACAACAACAACCTCAATGCCACCACTGGTGGGTGGCAATTCCCTTCAGGGTTGCAGGGTTTGACACAGTTGACCAATGTGTCTTGTATGAGTTGCAACTTGGCTGGTCCAATTCCTAGTTTTCTAGGGAAAATGGTGTCTTTGTCGGTGTTGCAACTTTCCGGCAACAACTTAACCGGCGAGATTCCGGCGACATTTAATGGCATCCCGGGTTTGCAGGTTCTCTGGTTGAATAACCAACAGGGTGGCGGCCTCACTGGTACTATAGAAGTGGTGGCAACCATGGTCTCGCTCACGAGTTTGTGGCTCCATGGGAATCAGTTTGAAGGTAACATTCCGTTGAATTTTGGGAATTTGACTTTTCTGAAGGATCTTGATCTCAATGGGAACCAGCTTGTTGGGTTAATCCCTGAAGCTTTAGGTAAAATGCAATTGGACCGTTTAGATTTGAACAACAACCACTTCATGGGTCCAATCCCAAATTTTGTAACAAAAAAAGTCACTTTTGATTCTAATAATTTTTGTCAGTCCAAACCTGGGGTTCTTTGTTCCTTTGAGGTCATGGCGCTGCTAGAGTTTCTTGGTGGGTTGAATTATCCTTCAAATCTAGTTAATTCATGGACTGGTAATAATCCATGTGATGGACCGTGGTTGGGAATAAAGTGCAATGACAATGGAAAGGTAACTATGATTATTTTGTCTAACTTTAATCTTAGTGGTACTCCAAGTCCTTCGGTTGCAAACTTGGATTTCCTTGTTGAAATCAGGTTGGGAGGTAACAATCTTAGTGGTGAAATACCCAGCAACTGGACTAGCTTGAGATCCCTGACATTGTTGGATCTAAGTGGTAATAACATTTCCCCTCCATTGCCAAATTTTCCTAGAAGCTTGAAACTTGTGATTGATGGTAATCCTCAGTTAAATCATGGTAGCCCAGAAAAATCTCCATCAGGGACTAGCCCGTCATATAGAAAGGCTGAACCTTTATCTGATATTCCATCAACAGACTCAAATTCCAATTCCAGTAGTTCTCTTGATTCAAAAAATTCCAAAAGGGAAAACTTGGTTTCAATTGTTGCCCCTATTGCAGGTATTGCAGTTGCAGCTTTTCTGCTCATTCCCCTTTATGTATATTGTTTCAGGAGGAGAAAGGGTATCTCCAAGGGTCTTAGTTCACTAGTAGTTCACCCTAGAGATCCATCTGATTCAGACAATGTGGCAAAGGTTGTTGTTGCTAACAATAGCAATGGAAGCAATATTTCCACAGCATCAGGCAGTGGGTCAGGGAATCTAATTGGAAATGGGGAGTCTCATGTCATTGAAGCTGGAAATCTCGTGATATCAGTTCAAGTTCTTCGAAATGTGACCAAGAATTTTGCCCCAGAGAATATGCTTGGACGTGGAGGATTTGGGGTTGTTTACAAGGGAGAAGTGGATGATGGGACTAAAATTGCAGTAAAAAGAATGGAATGTGGTGTGATTAGCAGCAAAGCCTTGGATGAATTTCAATCTGAAATTGCAGTTCTATCAAAAGTTCGACATCGTCATTTGGTGTCTCTTCTAGGTTATTCAGTTGAAGGTGCGGAGAGACTTCTAGTTTATGAGTATATGCCACAAGGGGCTCTCAGTGATCATCTTTTCCATTGGAAGAGCTTACAATTGGAGCCCCTATCTTGGAAGAGGAGGCTCAATATTGCTTTGGATGTTGCCAGAGGAATGGAGTATCTTCATAGTCTGGCTCACCAGAGTTTCATTCACAGAGATCTTAAATCATCAAATATTTTGCTTGGGGATGACTTTAGAGCAAAAGTTTCCGATTTTGGGCTGGTAAAACTTGCTCCTGATGGCAAAAAATCTGTAATGACACGACTTGCTGGTACATTTGGATACTTGGCACCAGAATATGCAGTAACTGGAAAAATCACTACCAAGGCAGATGTTTTCAGTTTTGGTGTCGTCCTAATGGAACTGTTAACCGGATTAATGGCACTTGATGAAGATAGACCTGAGGAAAGCCAATACTTGGCAGCATGGTTCTGGCATATAAAATCAGATAAGGAGAAACTAATGACTGCTATTGACCCAGTCCTTGATATAAAGGAAGAAACATTTGGGAGCATCAAAACCATTGCTGAGTTAGCTGGGCATTGCACTGCCAGAGAACCAAACCAAAGGCCAAATATGGGTCATGCTGTGAATGTTCTGGCACCACTTGTTGAAAAATGGAAACCATTAGATGATGACACTGAAGAGTATTCAGGCATAGATTATAGTCTTCCCCTTAACCAGATGGTAAAGGGGTGGCAGGAGACAGAAGGAAAGGATTTGAGTTATATAGACATGCAAGACAGTAAGAGTAGTATCCCAGCAAGGCCTACTGGATTTGCAGAGTCTTTTACTTCTTCTGATGGTCGGTGA 2865 0.4216 MEDSYLKLISFLILSLAWVVLTDTNPNDVNILNQFRKGLKNPELLQWPEEEEGGDPCGNPPWKYIYCNGNRISQIQAKNLNLVGSLPQNMNQLTMLENLGLQNNKLNGPLPSFSGLSKLKYAFLNYNEFESIPEDFFDGLESLEVLALDYNNNLNATTGGWQFPSGLQGLTQLTNVSCMSCNLAGPIPSFLGKMVSLSVLQLSGNNLTGEIPATFNGIPGLQVLWLNNQQGGGLTGTIEVVATMVSLTSLWLHGNQFEGNIPLNFGNLTFLKDLDLNGNQLVGLIPEALGKMQLDRLDLNNNHFMGPIPNFVTKKVTFDSNNFCQSKPGVLCSFEVMALLEFLGGLNYPSNLVNSWTGNNPCDGPWLGIKCNDNGKVTMIILSNFNLSGTPSPSVANLDFLVEIRLGGNNLSGEIPSNWTSLRSLTLLDLSGNNISPPLPNFPRSLKLVIDGNPQLNHGSPEKSPSGTSPSYRKAEPLSDIPSTDSNSNSSSSLDSKNSKRENLVSIVAPIAGIAVAAFLLIPLYVYCFRRRKGISKGLSSLVVHPRDPSDSDNVAKVVVANNSNGSNISTASGSGSGNLIGNGESHVIEAGNLVISVQVLRNVTKNFAPENMLGRGGFGVVYKGEVDDGTKIAVKRMECGVISSKALDEFQSEIAVLSKVRHRHLVSLLGYSVEGAERLLVYEYMPQGALSDHLFHWKSLQLEPLSWKRRLNIALDVARGMEYLHSLAHQSFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGKKSVMTRLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGLMALDEDRPEESQYLAAWFWHIKSDKEKLMTAIDPVLDIKEETFGSIKTIAELAGHCTAREPNQRPNMGHAVNVLAPLVEKWKPLDDDTEEYSGIDYSLPLNQMVKGWQETEGKDLSYIDMQDSKSSIPARPTGFAESFTSSDGR 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2323g00009 954 ProSitePatterns Protein kinases ATP-binding region signature. 614 636 IPR017441 GO:0005524
Gabi2323g00009 954 SMART serkin_6 608 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2323g00009 954 ProSiteProfiles Protein kinase domain profile. 608 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2323g00009 954 ProSitePatterns Serine/Threonine protein kinases active-site signature. 733 745 IPR008271 GO:0004672|GO:0006468
Gabi2323g00009 954 MobiDBLite consensus disorder prediction 453 499 - -
Gabi2323g00009 954 SUPERFAMILY Protein kinase-like (PK-like) 589 892 IPR011009 -
Gabi2323g00009 954 SUPERFAMILY L domain-like 335 446 - -
Gabi2323g00009 954 Pfam Leucine rich repeat N-terminal domain 337 372 IPR013210 -
Gabi2323g00009 954 Pfam Leucine rich repeat N-terminal domain 26 68 IPR013210 -
Gabi2323g00009 954 MobiDBLite consensus disorder prediction 931 954 - -
Gabi2323g00009 954 FunFam receptor protein kinase TMK1 570 685 - -
Gabi2323g00009 954 FunFam Leucine-rich repeat receptor-like kinase 334 459 - -
Gabi2323g00009 954 Gene3D Ribonuclease Inhibitor 25 331 IPR032675 -
Gabi2323g00009 954 Gene3D Ribonuclease Inhibitor 334 460 IPR032675 -
Gabi2323g00009 954 SUPERFAMILY L domain-like 25 311 - -
Gabi2323g00009 954 CDD STKc_IRAK 614 887 - -
Gabi2323g00009 954 PANTHER OSJNBA0070M12.3 PROTEIN 10 954 - -
Gabi2323g00009 954 Gene3D Transferase(Phosphotransferase) domain 1 686 904 - -
Gabi2323g00009 954 Pfam Protein tyrosine and serine/threonine kinase 612 882 IPR001245 GO:0004672|GO:0006468
Gabi2323g00009 954 MobiDBLite consensus disorder prediction 457 473 - -
Gabi2323g00009 954 MobiDBLite consensus disorder prediction 480 499 - -
Gabi2323g00009 954 Gene3D Phosphorylase Kinase; domain 1 580 685 - -
Gabi2323g00009 954 FunFam receptor protein kinase TMK1 686 903 - -
Gabi2323g00009 954 Pfam Leucine rich repeat 96 152 IPR001611 GO:0005515
Gabi2323g00009 954 SMART LRR_typ_2 422 445 IPR003591 -
Gabi2323g00009 954 SMART LRR_typ_2 194 217 IPR003591 -
Gabi2323g00009 954 SMART LRR_typ_2 244 267 IPR003591 -
Gabi2323g00009 954 SMART LRR_typ_2 268 291 IPR003591 -
Gabi2323g00009 954 SMART LRR_typ_2 116 139 IPR003591 -
Gabi2323g00009 954 FunFam Receptor-like kinase TMK4 26 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2323g00009 Gabi-Chr2323 169755 173230 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2323g00009 60 921 Receptor kinase-like Gene Family AT1G55610 30.425 3.13e-84 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Gabi2323g00009 PK_Tyr_Ser-Thr 8.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2323g00009 K00924 - gmx:100781857 1415.21