Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2322g00019 ATGAACATTACAAACGCAAATGACACCAATGTGAATGTCCTCGATCACATTAAACCATCTATCACGACCGCGTTTCAGGACCCTCCAGCTCCGGCGACGGCGGCAATCTCCGGGAGTTCGAGCCTCCAAAACATTTTCTTGGCGGAGAACTGGGCGGAGCTGCCGTTGAAGGAGGATGATGCCGATGACATGGTTATCTATGGCGCTTTGCTTGAGGCTGCAAGCAACGGATGGTTCCCCGCAACTAACAGTAAGGTGAACAACGTTGATGTGGAGGTGAAAATGGAAAATGAAAGCCAGAATCTTGATATTGCGGAGGCGCGTGTAGCTCACGCTCCGGGTTACAGAGGAGTACGAAGAAGGCCATGGGGGAAGTATGCGGCAGAGATAAGGGATCCAAAGAGAAACGGCGCAAGGGTATGGCTTGGAACTTACGAGTCAGCTGAGGATGCGGCTTTGGCTTATGATCGAGCCGCGTTTAAAATGCGCGGCCCCAAAGCCAAGTTAAATTTTCCTCATTTAATTGGTTCCGGTGATGCTGAGCCGGTTAGGGTCACGCTTAAGCGGCGCTCGCCGGAATTACCCTCGCCATCTGCGGTGGCTGAGAAGCGTAGTAAGCATGACTCTGTGGCGGCTTTGGAGCTGGATGAGTCAAATATGTGGCAATTTTATATGGACACTTGGCAATAA 690 0.513 MNITNANDTNVNVLDHIKPSITTAFQDPPAPATAAISGSSSLQNIFLAENWAELPLKEDDADDMVIYGALLEAASNGWFPATNSKVNNVDVEVKMENESQNLDIAEARVAHAPGYRGVRRRPWGKYAAEIRDPKRNGARVWLGTYESAEDAALAYDRAAFKMRGPKAKLNFPHLIGSGDAEPVRVTLKRRSPELPSPSAVAEKRSKHDSVAALELDESNMWQFYMDTWQ 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2322g00019 229 SUPERFAMILY DNA-binding domain 114 173 IPR016177 GO:0003677
Gabi2322g00019 229 PANTHER DNA-BINDING DOMAIN 92 198 IPR044808 GO:0003700|GO:0009873
Gabi2322g00019 229 Pfam AP2 domain 113 164 IPR001471 GO:0003700|GO:0006355
Gabi2322g00019 229 CDD AP2 113 174 IPR001471 GO:0003700|GO:0006355
Gabi2322g00019 229 Coils Coil 88 108 - -
Gabi2322g00019 229 PRINTS Ethylene responsive element binding protein signature 154 174 IPR001471 GO:0003700|GO:0006355
Gabi2322g00019 229 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Gabi2322g00019 229 Gene3D AP2/ERF domain 114 173 IPR036955 GO:0003700|GO:0006355
Gabi2322g00019 229 SMART rav1_2 114 178 IPR001471 GO:0003700|GO:0006355
Gabi2322g00019 229 FunFam Ethylene-responsive transcription factor 2 113 173 - -
Gabi2322g00019 229 ProSiteProfiles AP2/ERF domain profile. 114 172 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2322g00019 Gabi-Chr2322 234736 235425 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2322g00019 41 226 AP2-EREBP Transcription Factor Family AT2G44840 52.261 4.94e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2322g00019 AP2 5.2e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2322g00019 K09286 - gmx:100804762 251.906