Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2322g00018 ATGAACAACGTTGATGCAGCTGCAAAAATGGAAAATGAGTGTCAAAACAGTAATGCTAGAGAGGCGCGTGGAGTTCACGCGCCGATCTACGGAGGTGTCCGAAGAAGACCATGGGAGAAGTATGCGGCAGAGATAAGAGACCCTAAGAAAAATGGCGCAAGGGTATGGCTTGGGACTTATGAATCAGCCAAGGATGCAACTTTGGCTTATGATCAAGCCGCGTTTAAGCTGCGAGGCTCAAAAGCCGAGCTGAATTTTCCTTATTCGATTCACTCAGGTGATGCTGAGCCGGTTAAGCTCATGCTGATCAAGCGGCTCTTGCCTGAGCTGCCCTTGCCATCCGCTAGTTAA 351 0.4929 MNNVDAAAKMENECQNSNAREARGVHAPIYGGVRRRPWEKYAAEIRDPKKNGARVWLGTYESAKDATLAYDQAAFKLRGSKAELNFPYSIHSGDAEPVKLMLIKRLLPELPLPSAS 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2322g00018 116 SMART rav1_2 29 93 IPR001471 GO:0003700|GO:0006355
Gabi2322g00018 116 Gene3D AP2/ERF domain 29 89 IPR036955 GO:0003700|GO:0006355
Gabi2322g00018 116 FunFam Ethylene-responsive transcription factor 2 28 88 - -
Gabi2322g00018 116 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Gabi2322g00018 116 PRINTS Ethylene responsive element binding protein signature 69 89 IPR001471 GO:0003700|GO:0006355
Gabi2322g00018 116 Pfam AP2 domain 29 79 IPR001471 GO:0003700|GO:0006355
Gabi2322g00018 116 PANTHER DNA-BINDING DOMAIN 16 91 IPR044808 GO:0003700|GO:0009873
Gabi2322g00018 116 CDD AP2 28 89 IPR001471 GO:0003700|GO:0006355
Gabi2322g00018 116 SUPERFAMILY DNA-binding domain 29 89 IPR016177 GO:0003677
Gabi2322g00018 116 ProSiteProfiles AP2/ERF domain profile. 29 87 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2322g00018 Gabi-Chr2322 232259 232609 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2322g00018 19 116 AP2-EREBP Transcription Factor Family AT2G44840 61.165 8.56e-35 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi2322g00018 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2322g00018 K09286 - gmx:100793366 134.806